Glyma05g21110 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma05g21110

Feature Type:	gene_model
Chromosome:	Gm05
Start:	25433203
stop:	25435209
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g21110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G67290	AT	Annotation by Michelle Graham. TAIR10: FAD-dependent oxidoreductase family protein \| chr5:26848419-26849755 REVERSE LENGTH=406	SoyBase	E_val: 3.00E-174	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG2852	KOG	Possible oxidoreductase	JGI		ISS
PTHR13847	Panther	FAD NAD BINDING OXIDOREDUCTASES	JGI		ISS
PTHR13847:SF10	Panther	SARCOSINE DEHYDROGENASE	JGI		ISS
PF01266	PFAM	FAD dependent oxidoreductase	JGI		ISS
UniRef100_I1K275	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K275_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9FN21	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: FAD-dependent oxidoreductase-like protein n=2 Tax=Arabidopsis thaliana RepID=Q9FN21_ARATH	SoyBase	E_val: 1.00E-171	ISS

Expression Patterns of Glyma05g21110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g21110

Paralog	Evidence	Comments
Glyma17g18320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g21110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g097800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g21110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g21110

Limit To All Plant Sequences

>Glyma05g21110.1   sequence type=CDS   gene model=Glyma05g21110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCTGGTGGCCTGGTGGGGAGTGGGGACTCCGCGATCCTCGACAGTACAATTTCACCGAGTTCCCATCAGCAGTGCGAAGGGGAGTCCCATGGCTGACCCCAAGCGAGTAGTTGTCTGCGGCGGCGGAGTCATCGGAGTCTCCACCGCCTACTTTCTGGCGGAGAAGGGCGCCGACGTCACGCTCATCGAGAAGTCCGACGTGGCATGCGCCGCGTCCGGAAAAGCCGGTGGATTCCTCGCCCTCGATTGGTGCGACGGAGGACCGCTGGAAGAGCTAGCTCGCACGAGCTTCAATCTCCACCGTTCGCTCTCCGAAGAACTGGACGGTCCGCGATCGTACGGTTACAGAGCCCTCACCACTCTCAGCCTCACCGTTGCCGAATCCGAAGGCTCCTCTTCTGCCACATCAACGTTGCCGTCTTGGGTTAACGGAGCAGCTCGCAGTTGTAAAACGATTGGAACACCAGAAACGACGGCGCAGGTGCACCCGCGGCTCTTCACTCGCGCGCTGATTGATAGAGCGGTGGAGAAGCATGGGGTGAAGGTGGAGATTGCCAAACTGGAACGGTTGGAAGTGGAAGAAGGACGAGTTGGATCGGTGGTGCTTGAAGGAGGACGAGTTTTGGAAGCGGATGCTGTTGTGTTGGCATTGGGTCCGTGGTCCAGTAAGTTAGTTCTGTTATCATCGCTGTTTAGAGTTTATGGGCTTAAGGCCCATAGCCTTGTGTTAGAGCCCAGAGAACACAGTTCCATAACTCCACACGCGCTTTCTCTCACTTATTATCCCTCCGGACGAGAAACACCTCTTGTTGACCTAGAAGTGTATCCTCGTCCCACAGGGGAAGTGTATTTGTGTGGGGTGGGGGAGGTGGAAGAGGTGCCGGATGATCCTGAGGAGATAAGGAGCAACCCTGAATGGAAAGAGTTGCTGAGGAGGGTGGCGAAGAATGTGTCGAGCTATCTTGGGGAAGAAGTGGCACGTGTGAAGGCAGAGCAAGCGTGTTTCTTGCCCTGCACTGATGATGGGGTACCTGTAATAGGAGAGGTTCCAGGGGTGAAGGGGTGTTATGTGGCCACAGGGCATAACTGTTGGGGTATTCTCAATGGTCCTGCCACTGGTGCTGCTGTTGCTGAGCTTGTTGTTGATGGACATTCCAGCATTGTTGCTCTTAAGCGCTTTAGTCCTGCTAGATTCCTTGGGCTTTCTAGAAAGGCTTAG

Predicted protein sequences of Glyma05g21110

Limit To All Plant Sequences

>Glyma05g21110.1   sequence type=predicted peptide   gene model=Glyma05g21110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNLVAWWGVGTPRSSTVQFHRVPISSAKGSPMADPKRVVVCGGGVIGVSTAYFLAEKGADVTLIEKSDVACAASGKAGGFLALDWCDGGPLEELARTSFNLHRSLSEELDGPRSYGYRALTTLSLTVAESEGSSSATSTLPSWVNGAARSCKTIGTPETTAQVHPRLFTRALIDRAVEKHGVKVEIAKLERLEVEEGRVGSVVLEGGRVLEADAVVLALGPWSSKLVLLSSLFRVYGLKAHSLVLEPREHSSITPHALSLTYYPSGRETPLVDLEVYPRPTGEVYLCGVGEVEEVPDDPEEIRSNPEWKELLRRVAKNVSSYLGEEVARVKAEQACFLPCTDDGVPVIGEVPGVKGCYVATGHNCWGILNGPATGAAVAELVVDGHSSIVALKRFSPARFLGLSRKA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain