SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G67220 | AT | Annotation by Michelle Graham. TAIR10: FMN-linked oxidoreductases superfamily protein | chr5:26820276-26821926 REVERSE LENGTH=423 | SoyBase | E_val: 0 | ISS |
| GO:0006808 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of nitrogen utilization | SoyBase | N/A | ISS |
| GO:0008033 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA processing | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0017150 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: tRNA dihydrouridine synthase activity | SoyBase | N/A | ISS |
| GO:0050660 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding | SoyBase | N/A | ISS |
| KOG2335 | KOG | tRNA-dihydrouridine synthase | JGI | ISS | |
| PTHR11082 | Panther | TRNA-DIHYDROURIDINE SYNTHASE | JGI | ISS | |
| PTHR11082:SF5 | Panther | NITROGEN REGULATION PROTEIN NIFR3-RELATED | JGI | ISS | |
| PF01207 | PFAM | Dihydrouridine synthase (Dus) | JGI | ISS | |
| UniRef100_B9T4U6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: tRNA-dihydrouridine synthase, putative n=1 Tax=Ricinus communis RepID=B9T4U6_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K265 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K265_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g20510 not represented in the dataset |
Glyma05g20510 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g096300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g20510.1 sequence type=CDS gene model=Glyma05g20510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAACCAAAACCTAAACCCTACTCCTTCCTCCCTCTCAACCGATTTCTTCGCGCGCTACAATCTCGTCCCCTCATGGCCCAAACCCCAACATCTCTCGATGCAGAGCACCCCTCCGACAACGACCAGCACATGGGCTTTCGGGCGCGGAGCCTGAGCGGAGAGTCTCGGGCGGAGCAAGCGTGGGCCCATTGGACCAAGCTGGGCCGGCCCAGGTTCATAGTGGCCCCGATGGTCGACAACTCGGAGCTGCCTTTCCGGATGCTGTGCCGCAAGTACGGTGCCCAGGGCGCGTACACGCCCATGCTCCATTCCCGCATTTTCACCGAGACCGAAAAGTATAGGAACGAAGAGTTCACCACTTGCAAGGAGGATCGACCGTTGTTTGTTCAATTCTGTGCCAACGATCCGGATGTGTTGTTGGAAGCTGCACGCAAGGTGGAACGTTTTTGCGATTATGTTGATATTAATCTTGGGTGTCCTCAGCGCATTGCTAAACGGGGATACTATGGTGCCTTCTTGATGGATAACCTTCCTCTTGTGAAATCTCTGGTGGAAAAATTGGCTGTTAACCTTCAGGTTCCTGTTTCATGCAAGATTAGGCTCTTTCCAAATTTAGAGGACACTTTGAAGTATGCTAGGATGCTTGAGGAGGCTGGTTGTATGCTTTTAGCTGTTCATGGCAGGACAAGAGATGAGAAGGATGGGAAGAAATTTCGAGCAGACTGGAAAGCTATCAGGGCTGTGAAGAATGCAGTCAGAATCCCTGTCCTTGCGAATGGGAACATAAGGCATATTGATGATGTTAGAGACTGCTTAGAAGAGACTGGGGTCGAAGGGGTTCTTTCCGCTGAGACCCTGCTAGAAAATCCAGCTCTCTTTGCTGGATTTCGAACTGCTGAGTGGGTGTCTGAAAGTGAAGGTACCAATGTGGATGGAAAGCTGGACCAGGCAGATCTGCTAATAGAGTATTTGAAGCTTTGTGAAAAATACCCTGTTCCGTGGAGAATGATTCGTTCTCATGTTCATAAATTGTTGGGAGACTGGTTCAGCCTTCAGCCTCACATCAGGGAGGAACTTAACAAACAATCTAAATTGACTTTTGAATTTCTTTATGACATGGTGGATCGACTTAGGGCTACAGGTATAAGAATTCCACTTTACAAAGATACCCAAGTGGAACTTACAGCAGGCAGTTACCCAGATTAA
>Glyma05g20510.1 sequence type=predicted peptide gene model=Glyma05g20510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKPKPKPYSFLPLNRFLRALQSRPLMAQTPTSLDAEHPSDNDQHMGFRARSLSGESRAEQAWAHWTKLGRPRFIVAPMVDNSELPFRMLCRKYGAQGAYTPMLHSRIFTETEKYRNEEFTTCKEDRPLFVQFCANDPDVLLEAARKVERFCDYVDINLGCPQRIAKRGYYGAFLMDNLPLVKSLVEKLAVNLQVPVSCKIRLFPNLEDTLKYARMLEEAGCMLLAVHGRTRDEKDGKKFRADWKAIRAVKNAVRIPVLANGNIRHIDDVRDCLEETGVEGVLSAETLLENPALFAGFRTAEWVSESEGTNVDGKLDQADLLIEYLKLCEKYPVPWRMIRSHVHKLLGDWFSLQPHIREELNKQSKLTFEFLYDMVDRLRATGIRIPLYKDTQVELTAGSYPD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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