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Report for Sequence Feature Glyma05g20160

Feature Type:gene_model
Chromosome:Gm05
Start:24161347
stop:24163806
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g20160
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G42930AT Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr5:17210738-17214152 REVERSE LENGTH=467 SoyBaseE_val: 8.00E-102ISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0004806GO-mf Annotation by Michelle Graham. GO Molecular Function: triglyceride lipase activity SoyBaseN/AISS
PTHR10992Panther ALPHA/BETA HYDROLASE RELATED JGI ISS
PTHR10992:SF274Panther TRIACYLGLYCEROL LIPASE JGI ISS
PF01764PFAM Lipase (class 3) JGI ISS
UniRef100_G7K6N4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Lipase n=1 Tax=Medicago truncatula RepID=G7K6N4_MEDTR SoyBaseE_val: 4.00E-154ISS
UniRef100_I1K253UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1K253_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g20160
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g20160 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g095300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g20160
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g20160
>Glyma05g20160.2   sequence type=CDS   gene model=Glyma05g20160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAAATTACCCTTAGAGTATCAAGAAAAGACAACAACTCAAGTCTTGATTGCCTTGTATAAGCATGAGGATCGCCATACATATGTTGTAGCCTTCAGAGGAACAGAACCCTTTGAAGCTGATGCATGGTGCACCGATCTTGACATATCATGGTATGGTATTCCTGGCGTTGGAAGAATGCATGGTGGCTTTATGAAAGCCTTAGGGCTCCAGAAGAATGTTGGATGGCCAAAGGAAATTGAACGTGATGAGAATCTTCCCCCCTTAGCCTACTATATACCAAAGTTTATAGTGACAGGGCATAGTATGGGAGGAGCACTTGGAATCCTCTTTGGGACGATATTGTGTTTGCACAATGAGACATTGTTGTTGGAGAGGTTGGAAGGGATCTACACCTTTGGGCAACCAAGACTTGGGGATGAAGCATATACAAATTATTTGAGACAAAAATTTAAGGGACATCATGTCAGGTATTGTAGGTTTGTTTATTGTAATGACCTTGTTCCGAGGTTGCCCTATGATGACAAGGAAATGATGTTCAAGCACTTTGGGACATGTCTTTTCTTTAATAGACACTATGAATTTGAGGTTCTTGAAGAACAATGGAATAAGAACTACTTCTCACTCTGGTGTGTGATACCCATGCCATACAATGCAATTTTAGAAATAATATGGAGCTTCATTATTGCCCGCCAAAGCGGACCTTACTACAGAGAAGGATGGTTTCTCTTTGCTTTCCGGACTATAGGCTTAATAATACCCGGGGTACCGGCTCATGGTCCCCAAGATTACCTTAATTCCACTCTTTTAGGAAAGATTGAAAAACACTTCAAAGCAGAGTGA
Predicted protein sequences of Glyma05g20160
>Glyma05g20160.2   sequence type=predicted peptide   gene model=Glyma05g20160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNKLPLEYQEKTTTQVLIALYKHEDRHTYVVAFRGTEPFEADAWCTDLDISWYGIPGVGRMHGGFMKALGLQKNVGWPKEIERDENLPPLAYYIPKFIVTGHSMGGALGILFGTILCLHNETLLLERLEGIYTFGQPRLGDEAYTNYLRQKFKGHHVRYCRFVYCNDLVPRLPYDDKEMMFKHFGTCLFFNRHYEFEVLEEQWNKNYFSLWCVIPMPYNAILEIIWSFIIARQSGPYYREGWFLFAFRTIGLIIPGVPAHGPQDYLNSTLLGKIEKHFKAE*






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