Glyma05g19920 - SoyBase

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Report for Sequence Feature Glyma05g19920

Feature Type:	gene_model
Chromosome:	Gm05
Start:	23924248
stop:	23925640
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g19920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G67060	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr5:26766276-26767001 FORWARD LENGTH=241	SoyBase	E_val: 2.00E-49	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0010500	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmitting tissue development	SoyBase	N/A	ISS
GO:0048445	GO-bp	Annotation by Michelle Graham. GO Biological Process: carpel morphogenesis	SoyBase	N/A	ISS
GO:0048462	GO-bp	Annotation by Michelle Graham. GO Biological Process: carpel formation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR12565	Panther	STEROL REGULATORY ELEMENT-BINDING PROTEIN	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_G7K6N1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor HEC2 n=1 Tax=Medicago truncatula RepID=G7K6N1_MEDTR	SoyBase	E_val: 6.00E-61	ISS
UniRef100_UPI000233A264	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A264 related cluster n=1 Tax=unknown RepID=UPI000233A264	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g19920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g19920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g094900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g19920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g19920

Limit To All Plant Sequences

>Glyma05g19920.2   sequence type=CDS   gene model=Glyma05g19920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGTGGACATAGTGAAAACTTCCAGCAACAACAACAACATGGACGTGATGGCAATGATGATGCAAATGGAAAAGTTCCCTGAATTATTCTGCGACCCTTTTTATACCACCTCTTACCAAGAAACCGATTTGTTATCAAGTGGAAGTTCCTCAACAACCAGTGCTTCCACCCTATTCAACAACAACAGCATTGTAACAACAACTCCACCACCGACGACGACTCTCGTCGATCCAACTCCGTCAAATGTTGTCCAATTTTCCAAAATCGATGACCTTTTCCAACACCAACACCAACAACAACCTATGTCACAGTCCCTTCAACCCTACCCTTCCGAGAAGAAGAACTCGATGGCGGCGATGAGGGAGATGATATTCCGAATAGCGGTTATGCAGCCCGTTCACATCGATCCTGAATCCATAAAGCCACCCAAGAGAAGGAACGTGAAGATCTCCAAGGATCCGCAGAGCGTGGCGGCGCGGCACAGAAGAGAAAGGATAAGCGAGAGAATAAGGATTCTTCAGAGATTGGTCCCTGGCGGCACCAAGATGGACACTGCTTCTATGTTGGACGAGGCCATTCACTACGTCAAGTTCTTGAAGAAACAGGTGCAGACGCTGGAGCAAGCAGGGGCAAATACGTCACCACACAGTAATACTAATAGTCCCAATAATCACGTTGTTGGTGCTGCTGGTTTTCCGCTAGGGATGTCTTCTAACTACTCCAATAATAGTAGTGTTAATTATTCTTCTTTGTTGATGAAGGGTGGTTGCCAACCTTGTCAAATGTTCGGTTCCACTTCTAAACAATTGCTCAGCTAA

Predicted protein sequences of Glyma05g19920

Limit To All Plant Sequences

>Glyma05g19920.2   sequence type=predicted peptide   gene model=Glyma05g19920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVDIVKTSSNNNNMDVMAMMMQMEKFPELFCDPFYTTSYQETDLLSSGSSSTTSASTLFNNNSIVTTTPPPTTTLVDPTPSNVVQFSKIDDLFQHQHQQQPMSQSLQPYPSEKKNSMAAMREMIFRIAVMQPVHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGANTSPHSNTNSPNNHVVGAAGFPLGMSSNYSNNSSVNYSSLLMKGGCQPCQMFGSTSKQLLS*

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