SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| ATMG00220 | AT | Annotation by Michelle Graham. TAIR10: apocytochrome b | chrM:60235-61416 FORWARD LENGTH=393 | SoyBase | E_val: 0 | ISS |
| GO:0009060 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aerobic respiration | SoyBase | N/A | ISS |
| GO:0022904 | GO-bp | Annotation by Michelle Graham. GO Biological Process: respiratory electron transport chain | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005750 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex III | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0008121 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquinol-cytochrome-c reductase activity | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG4663 | KOG | Cytochrome b | JGI | ISS | |
| PTHR19271 | Panther | CYTOCHROME B | JGI | ISS | |
| PF00032 | PFAM | Cytochrome b(C-terminal)/b6/petD | JGI | ISS | |
| PF00033 | PFAM | Cytochrome b(N-terminal)/b6/petB | JGI | ISS | |
| UniRef100_H8Y6Q3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome b n=3 Tax=Glycine max RepID=H8Y6Q3_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_H8Y6Q3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Cytochrome b n=3 Tax=Glycine max RepID=H8Y6Q3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g18342 not represented in the dataset |
Glyma05g18342 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g092000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g18342.1 sequence type=CDS gene model=Glyma05g18342 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCTATATCCTCCACACTTAATCAACATTTGATAGATTATCCAACCTCGAGCAATCTTAGTTATTGGTGGGGCTTCGGTTTGTTAGCTGGTATTTGTTTATTCATTCAGATAGTGATTGGCATTTTTTTAGCTATGCATTACACACCTCATGTGGATCTAGCTTTCAACAGCGTAGAACACGTTATGAGAGATGTTGAGGGGGGCTGGTTGCTCCATTATATGCATGCTAATGGGGCAAGTATATTTCTCATTGTGGTTCACCTTCATATTTTTCATGGTCTATATCATGCGAGTTATAGCATTCCTAGGGAATTTGTTCGGTGTCTCGAAGTTGTAATCTTCCTATTAATGATTGTGACAACTTTTACAGGATACGTACTACCTTGGGGTCAGATGAGCTTTTGGGGAGCTATAGTAATTACAAGCTTAGCTAGCGCCATACCTGTAGTAGGAGATACCATAGTGACTTGGCTTTGGGGTGGTTTCTCTGTGGACAATGCCACCTTAAATCGTTTTTTTAGTCTTCATCATTTACTCCCCTTTCTTTTAGTAGGCGCTAGTCATCTTCATCTGGCCACATTGCATCAATATGGATCAAATAATCCATTGGGGGTATATTCAGAGATGGATCAAATTTCTTTTTACCCTTATTTTTATGTAAAGGATCTAGTAGGTTGGGTAGCTTTTGCTATCTTTTTTTCCATTTGGATTTTTTATGCTCTTGATATTTTGGGCCATCCCGACAATTATATACCCGCTAATCCGATGCCCACCCCGCCTCATATTGTGCCGGAATGGTATTTCCTACCGATCCATGCCATTCTTCGTAGTATACCTAACAAATCGGGAGGTGTAGCCGCAATAACACCATATGTACTGCGCAGTTCAAGTTTTTGCCCTATTCACCAAGGAATATTTTGGTTGCTTTTGGCAGATCGCTTACTACTAGGTAGGATCGGATGCCAACCTGTGGAGGCACCTTTTGTTACTATTGGACAAATTCCTCCTTTTGTTTTTTTCTTGTTCTTTGTCATAACGCCCATTCTAGGACGAGTTGGAAGAGGAATTCCGAATTCTTACACGGATGAGACTAATCAGTGA
>Glyma05g18342.1 sequence type=predicted peptide gene model=Glyma05g18342 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high PISSTLNQHLIDYPTSSNLSYWWGFGLLAGICLFIQIVIGIFLAMHYTPHVDLAFNSVEHVMRDVEGGWLLHYMHANGASIFLIVVHLHIFHGLYHASYSIPREFVRCLEVVIFLLMIVTTFTGYVLPWGQMSFWGAIVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHLLPFLLVGASHLHLATLHQYGSNNPLGVYSEMDQISFYPYFYVKDLVGWVAFAIFFSIWIFYALDILGHPDNYIPANPMPTPPHIVPEWYFLPIHAILRSIPNKSGGVAAITPYVLRSSSFCPIHQGIFWLLLADRLLLGRIGCQPVEAPFVTIGQIPPFVFFLFFVITPILGRVGRGIPNSYTDETNQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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