SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G67170 | AT | Annotation by Michelle Graham. TAIR10: SEC-C motif-containing protein / OTU-like cysteine protease family protein | chr5:26799851-26801763 FORWARD LENGTH=375 | SoyBase | E_val: 3.00E-91 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0008234 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cysteine-type peptidase activity | SoyBase | N/A | ISS |
| PTHR12419 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF02810 | PFAM | SEC-C motif | JGI | ISS | |
| UniRef100_B9SCB5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: OTU domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SCB5_RICCO | SoyBase | E_val: 4.00E-93 | ISS |
| UniRef100_UPI0002339713 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339713 related cluster n=1 Tax=unknown RepID=UPI0002339713 | SoyBase | E_val: 0 | ISS |
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Glyma05g18232 not represented in the dataset |
Glyma05g18232 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g18232.1 sequence type=CDS gene model=Glyma05g18232 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCTGATACTTCTCAATTTCGGACTCAGTTGGATGCTCCGGGCTCATGCGTTGTTGAAGTGACTGCAGATGGTAATTGTTTCTTTAGGTTAACGACCCTAAAATCTATGGAAACTGATGGTACATGGGCTGGACATATGGAATTGCAGGCAGCTTCTCCTGTAACGCGTAAACATGTCCCTCGGTGGTACATAAGAAATTTTGGGGATCGTGGAATTCGTATGATCCATTTGTCTTATCATGATGGGGAGCATTATAACAGTGTGCGGTTAAAGGATGATCCTTTTGATGGACCTGCAAGGCCAATTGTAATTAAGGCTGATGCTGATCTTTCAGTACCATCACATCAAACAAAAGTTGTGGACAACAAACCCCATGGGCGAGCTGGTAGGGAAGCTTTCCAACCAGGGTCCATAAGGATGGTTATGGCAGGAACTGGATGTGAAAATGCTGAAAAAGTGGAACAGATTCTAGAGCAGGTAAATGGAGATGTCGATGCTGCAATAGAGTTTCTAATAGCAGAACAAAGAACAGAAGAATGCTCTGCAAACTCTGATTCCCTTCCAAGTCAGGCTAATACTCACACATTTGCTGGTGTTGATGAAAATAAGAATCATAAACAGCACAAAGAAGACATGGTAGAGGACAGCACTAATGATGAATCAAATAATAGCTCCAAGAAGACCAATAATAATATCACATTGCAATCAAATGACATGATTCCTAGAAACAAGGTCTGCCCGTGTGGTTCCAAAAAGAAATACAAAGCTTGTTGTGGATCTGCTTTGGGGAAACAATCGGCTAAGTTTGTTGTTAACCAAGTAGCTGACTCAAAAAGGGGGTTTCTGCAAAAGCTGAAGTACCTTGTGAATATGACTTGGTAA
>Glyma05g18232.1 sequence type=predicted peptide gene model=Glyma05g18232 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ADTSQFRTQLDAPGSCVVEVTADGNCFFRLTTLKSMETDGTWAGHMELQAASPVTRKHVPRWYIRNFGDRGIRMIHLSYHDGEHYNSVRLKDDPFDGPARPIVIKADADLSVPSHQTKVVDNKPHGRAGREAFQPGSIRMVMAGTGCENAEKVEQILEQVNGDVDAAIEFLIAEQRTEECSANSDSLPSQANTHTFAGVDENKNHKQHKEDMVEDSTNDESNNSSKKTNNNITLQSNDMIPRNKVCPCGSKKKYKACCGSALGKQSAKFVVNQVADSKRGFLQKLKYLVNMTW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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