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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma05g18232

Feature Type:gene_model
Chromosome:Gm05
Start:21664793
stop:21672556
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G67170AT Annotation by Michelle Graham. TAIR10: SEC-C motif-containing protein / OTU-like cysteine protease family protein | chr5:26799851-26801763 FORWARD LENGTH=375 SoyBaseE_val: 3.00E-91ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0008234GO-mf Annotation by Michelle Graham. GO Molecular Function: cysteine-type peptidase activity SoyBaseN/AISS
PTHR12419Panther UNCHARACTERIZED JGI ISS
PF02810PFAM SEC-C motif JGI ISS
UniRef100_B9SCB5UniRef Annotation by Michelle Graham. Most informative UniRef hit: OTU domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SCB5_RICCO SoyBaseE_val: 4.00E-93ISS
UniRef100_UPI0002339713UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339713 related cluster n=1 Tax=unknown RepID=UPI0002339713 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g18232 not represented in the dataset

Glyma05g18232 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma05g18232.1   sequence type=CDS   gene model=Glyma05g18232   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTGATACTTCTCAATTTCGGACTCAGTTGGATGCTCCGGGCTCATGCGTTGTTGAAGTGACTGCAGATGGTAATTGTTTCTTTAGGTTAACGACCCTAAAATCTATGGAAACTGATGGTACATGGGCTGGACATATGGAATTGCAGGCAGCTTCTCCTGTAACGCGTAAACATGTCCCTCGGTGGTACATAAGAAATTTTGGGGATCGTGGAATTCGTATGATCCATTTGTCTTATCATGATGGGGAGCATTATAACAGTGTGCGGTTAAAGGATGATCCTTTTGATGGACCTGCAAGGCCAATTGTAATTAAGGCTGATGCTGATCTTTCAGTACCATCACATCAAACAAAAGTTGTGGACAACAAACCCCATGGGCGAGCTGGTAGGGAAGCTTTCCAACCAGGGTCCATAAGGATGGTTATGGCAGGAACTGGATGTGAAAATGCTGAAAAAGTGGAACAGATTCTAGAGCAGGTAAATGGAGATGTCGATGCTGCAATAGAGTTTCTAATAGCAGAACAAAGAACAGAAGAATGCTCTGCAAACTCTGATTCCCTTCCAAGTCAGGCTAATACTCACACATTTGCTGGTGTTGATGAAAATAAGAATCATAAACAGCACAAAGAAGACATGGTAGAGGACAGCACTAATGATGAATCAAATAATAGCTCCAAGAAGACCAATAATAATATCACATTGCAATCAAATGACATGATTCCTAGAAACAAGGTCTGCCCGTGTGGTTCCAAAAAGAAATACAAAGCTTGTTGTGGATCTGCTTTGGGGAAACAATCGGCTAAGTTTGTTGTTAACCAAGTAGCTGACTCAAAAAGGGGGTTTCTGCAAAAGCTGAAGTACCTTGTGAATATGACTTGGTAA

>Glyma05g18232.1   sequence type=predicted peptide   gene model=Glyma05g18232   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ADTSQFRTQLDAPGSCVVEVTADGNCFFRLTTLKSMETDGTWAGHMELQAASPVTRKHVPRWYIRNFGDRGIRMIHLSYHDGEHYNSVRLKDDPFDGPARPIVIKADADLSVPSHQTKVVDNKPHGRAGREAFQPGSIRMVMAGTGCENAEKVEQILEQVNGDVDAAIEFLIAEQRTEECSANSDSLPSQANTHTFAGVDENKNHKQHKEDMVEDSTNDESNNSSKKTNNNITLQSNDMIPRNKVCPCGSKKKYKACCGSALGKQSAKFVVNQVADSKRGFLQKLKYLVNMTW*







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