SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G36920 | AT | Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein | chr4:17400998-17403140 FORWARD LENGTH=432 | SoyBase | E_val: 2.00E-136 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tissue development | SoyBase | N/A | ISS |
| GO:0009908 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flower development | SoyBase | N/A | ISS |
| GO:0010073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem maintenance | SoyBase | N/A | ISS |
| GO:0010093 | GO-bp | Annotation by Michelle Graham. GO Biological Process: specification of floral organ identity | SoyBase | N/A | ISS |
| GO:0019953 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sexual reproduction | SoyBase | N/A | ISS |
| GO:0030154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell differentiation | SoyBase | N/A | ISS |
| GO:0048316 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed development | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| PTHR11795 | Panther | PROTEIN KINASE | JGI | ISS | |
| PTHR11795:SF332 | Panther | JGI | ISS | ||
| PF00847 | PFAM | AP2 domain | JGI | ISS | |
| UniRef100_G7K5B3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor APETALA2 n=1 Tax=Medicago truncatula RepID=G7K5B3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233A25C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A25C related cluster n=1 Tax=unknown RepID=UPI000233A25C | SoyBase | E_val: 0 | ISS |
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Glyma05g18041 not represented in the dataset |
Glyma05g18041 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g091200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g18041.1 sequence type=CDS gene model=Glyma05g18041 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGGGATCTCAACGACTCACCCGATCAGAGGATTAACAAGGACGAGGAATCCGAAGAAGGGTGTTCTTCCCTCAATAAAACTTCCTTCGATGGAGATGATGACAACAACAACAACAAAGGCAAAAGGGTTGGATCTGTTTCCAATTCAAGCTCTTCAGCAGTAGTCATCGGAGACGGGTCAGAAGAAGAGTACGAGGAGGAAGAAGAAGATGAAGAAGGTGTTGGTGTTGGTGGTGGAAGAAGTATGAAGAAACGTAGCAGCAAGATTTTCGGGTTCTCTGTGACCCAAAATGAAGAAGAGTCCATGGACAGTGACCATCCACCTGTGACTAGACAATTTTTTCCGGTGGAAGATGCTGACGTGGCGGTTGCAACCGGTGGTGGTGGAACCGGTGTAAGCTCAACGTTCCCTCGTGCTCACTGGGTAGGTGTGAAATTTTGCCAATCAGAAACACTTGGCACCGGAAAATCATCAGTGGAAGTTTCTCAGCCTATGAAGAAGAGTCGCCGAGGACCGAGGTCAAGGAGCTCTCAGTATAGAGGAGTCACCTTCTACAGAAGAACGGGTCGCTGGGAGTCTCATATATGGGATTGTGGAAAACAAGTGTATCTAGGTGGATTTGACACAGCACATGCGGCTGCTCGTGCATATGATAGAGCGGCTATTAAATTCCGAGGAGTGGAGGCGGACATTAACTTCAACATTGAAGATTATGAAGATGACTTGAAGCAGATGAGCAATCTTACCAAGGAAGAGTTCGTGCACGTGCTTCGCCGACAAAGCACTGGATTTCCGAGAGGGAGTTCCAAGTATCGAGGTGTCACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTAGGGAAAAAGTACGTTTATTTGGGTCTCTTCGACACTGAGATCGAAGCTGCAAGGGCTTATGACAAAGCTGCCATAAAATGCAACGGCAAAGAGGCGGTAACAAATTTTGATCCCAGCATCTATGACAATGAGCTCAATTCCGAATCCACAGGTAACGCTCCAGATCACAATCTGGATTTAAGTTTGGGCAATTCAACTTCAAACCCTGGCAACGATCAAGCGTTGGGGAATCAAGCCCCAAATGCTGTAACCCATGATCAGCACATGCCATCTGAGTCTAATTGGCGTAATGGGGGAATCAAGCCTAAGCTGGTGAATATACTCCCAAAACCATGTTACAGAAGCAACAACAAGGACACACATGGAAGGGATGTGCACGGGGAGAGTGAAACACTGAGGATGCTAAGTCAAACCCACCTTCATTCTCCAGCCTTCAATGAAATGCAACAAAGATATGGTCCCTACAGGTCTCCGGGAGGAGAGTCTCAAATGCTTCAAAATTTTGCGCACATTCACCCACCAAATTTTCATTTTCCCAGAAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCAGTGGCTGATCAACAACAGTGGCAAACCGGGCCTTCACGTTATTTAGCAACTGCTGCAGCATCATCAAGTTTCCAACAAGAGATAAGACCCTCTTCTCAAGGTTGGCTGCAGAAAAATGGGCTCCACAGTCTCATGAGACCCTCATGA
>Glyma05g18041.1 sequence type=predicted peptide gene model=Glyma05g18041 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MWDLNDSPDQRINKDEESEEGCSSLNKTSFDGDDDNNNNKGKRVGSVSNSSSSAVVIGDGSEEEYEEEEEDEEGVGVGGGRSMKKRSSKIFGFSVTQNEEESMDSDHPPVTRQFFPVEDADVAVATGGGGTGVSSTFPRAHWVGVKFCQSETLGTGKSSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNSESTGNAPDHNLDLSLGNSTSNPGNDQALGNQAPNAVTHDQHMPSESNWRNGGIKPKLVNILPKPCYRSNNKDTHGRDVHGESETLRMLSQTHLHSPAFNEMQQRYGPYRSPGGESQMLQNFAHIHPPNFHFPRSSIGGRIGSDLSLSVADQQQWQTGPSRYLATAAASSSFQQEIRPSSQGWLQKNGLHSLMRPS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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