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Report for Sequence Feature Glyma05g17432

Feature Type:gene_model
Chromosome:Gm05
Start:20110786
stop:20114146
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g17432
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G66920AT Annotation by Michelle Graham. TAIR10: SKU5 similar 17 | chr5:26722963-26725370 FORWARD LENGTH=546 SoyBaseE_val: 0ISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0080167GO-bp Annotation by Michelle Graham. GO Biological Process: response to karrikin SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
KOG1263 KOG Multicopper oxidases JGI ISS
PTHR11709Panther MULTI-COPPER OXIDASE JGI ISS
PTHR11709:SF17Panther SUBFAMILY NOT NAMED JGI ISS
PF00394PFAM Multicopper oxidase JGI ISS
PF07731PFAM Multicopper oxidase JGI ISS
PF07732PFAM Multicopper oxidase JGI ISS
UniRef100_B9S8L8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Multicopper oxidase, putative n=1 Tax=Ricinus communis RepID=B9S8L8_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233A25AUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A25A related cluster n=1 Tax=unknown RepID=UPI000233A25A SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g17432
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g17432 not represented in the dataset
Glyma05g17432 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g17432 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g082700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g17432
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g17432
>Glyma05g17432.1   sequence type=CDS   gene model=Glyma05g17432   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAGGAATGGTATCAAGCAAAGGAAAAACTCTTGGCAAGATGGGGTATTGGGAACAAATTGCCCAATTCGTCCAAACTCAAATTACACATACAAGTTTCAGGCAAAGGATCAGATTGGAACCTACACATACTTTCCATCAACTTCACTGCATAAAGCAGCTGGAGGGTTTGGAGGACTCCATGTCTACCATAGATCTGTCATCCCAGTTCCTTATCCATACCCTGATGGAGATTTCACTTTACTCATTGGTGATTGGTACAAAACCAACCACAAGGTATTAAGGGAGTCTTTGGATTCTGGAAAATCTCTTGCCTTTCCTGATGGTCTCCTTATCAATGGCCAGGCTCATACTACCATAAATGGGGACCAGGGAAAGACCTATATGTTCAGGATCTCAAATGTGGGCCTGTCAACATCAATCAACTTCAGAATCCAGGGTCATACCCTGAAGCTAGTTGAGATTGAAGGATCACACATTGTCCAGAACACGTACGACACCCTTGATGTGCATGTTGGGCAATCAGCTGCTATGTTGGTAACCTTAAATCAGCCTCCAAAGGACTACTACATTGTTGCCTCAACAAGGTTTTCCAGAAAAGTACGCGTAGCAACTGCAGTGTTGCATTATTCAAACTCTAAATCCCCAGCTTCTGGACCTTTGCCTAGTTCCCCTATTTACCAATATCACTGGTCTGTGAAGCAAGCTAGAACCTACAGATGGAATCTGACAGCAAATGCTGCAAGGCCTAATCCACAAGGGTCATACCATTATGGAAAAATAACTCCTACAAAGACAATTGTGTTGTCCAATTCAGCACCTTTGATTAATGGAAAACTTTGTTATGCTGTCAACAAGGTTTCCTATGTTAACCCTGATACCCCTCTCAAGCTTGCTGATTACTTCAACATTCCCGGAATCTACAGTGTTGATTCAATCCAAAGCATTCCTTCTGATAATACTCCCACATCCATAGCCACCTCCGTAGTGCCAACTTCTCTCCATGATTTCATTGAGGTCATTTTTCAGAACAACGAAAACACCATGCAATCTTGGCATCTTGACGGTTATGACTTCTGGGTCGTGGGTTATGGTTTTGGCCAGTGGACCCCAGCCAAAAGAAGAACCTATAATCTAGTTGATGCCCTGACCAGGCACACTGCTCAGGTATACCCAAATGGTTGGACTACAATACTGGTGTCCTTGGACAACCAAGGTATATGGAATTTGAGGTCTGCAATATGGGAAAGGCAGTATCTTGGGCAGCAGATATAA
Predicted protein sequences of Glyma05g17432
>Glyma05g17432.1   sequence type=predicted peptide   gene model=Glyma05g17432   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERNGIKQRKNSWQDGVLGTNCPIRPNSNYTYKFQAKDQIGTYTYFPSTSLHKAAGGFGGLHVYHRSVIPVPYPYPDGDFTLLIGDWYKTNHKVLRESLDSGKSLAFPDGLLINGQAHTTINGDQGKTYMFRISNVGLSTSINFRIQGHTLKLVEIEGSHIVQNTYDTLDVHVGQSAAMLVTLNQPPKDYYIVASTRFSRKVRVATAVLHYSNSKSPASGPLPSSPIYQYHWSVKQARTYRWNLTANAARPNPQGSYHYGKITPTKTIVLSNSAPLINGKLCYAVNKVSYVNPDTPLKLADYFNIPGIYSVDSIQSIPSDNTPTSIATSVVPTSLHDFIEVIFQNNENTMQSWHLDGYDFWVVGYGFGQWTPAKRRTYNLVDALTRHTAQVYPNGWTTILVSLDNQGIWNLRSAIWERQYLGQQI*






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