SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G66920 | AT | Annotation by Michelle Graham. TAIR10: SKU5 similar 17 | chr5:26722963-26725370 FORWARD LENGTH=546 | SoyBase | E_val: 0 | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0080167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to karrikin | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG1263 | KOG | Multicopper oxidases | JGI | ISS | |
| PTHR11709 | Panther | MULTI-COPPER OXIDASE | JGI | ISS | |
| PTHR11709:SF17 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00394 | PFAM | Multicopper oxidase | JGI | ISS | |
| PF07731 | PFAM | Multicopper oxidase | JGI | ISS | |
| PF07732 | PFAM | Multicopper oxidase | JGI | ISS | |
| UniRef100_B9S8L8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Multicopper oxidase, putative n=1 Tax=Ricinus communis RepID=B9S8L8_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233A25A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A25A related cluster n=1 Tax=unknown RepID=UPI000233A25A | SoyBase | E_val: 0 | ISS |
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Glyma05g17432 not represented in the dataset |
Glyma05g17432 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g082700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g17432.1 sequence type=CDS gene model=Glyma05g17432 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAAGGAATGGTATCAAGCAAAGGAAAAACTCTTGGCAAGATGGGGTATTGGGAACAAATTGCCCAATTCGTCCAAACTCAAATTACACATACAAGTTTCAGGCAAAGGATCAGATTGGAACCTACACATACTTTCCATCAACTTCACTGCATAAAGCAGCTGGAGGGTTTGGAGGACTCCATGTCTACCATAGATCTGTCATCCCAGTTCCTTATCCATACCCTGATGGAGATTTCACTTTACTCATTGGTGATTGGTACAAAACCAACCACAAGGTATTAAGGGAGTCTTTGGATTCTGGAAAATCTCTTGCCTTTCCTGATGGTCTCCTTATCAATGGCCAGGCTCATACTACCATAAATGGGGACCAGGGAAAGACCTATATGTTCAGGATCTCAAATGTGGGCCTGTCAACATCAATCAACTTCAGAATCCAGGGTCATACCCTGAAGCTAGTTGAGATTGAAGGATCACACATTGTCCAGAACACGTACGACACCCTTGATGTGCATGTTGGGCAATCAGCTGCTATGTTGGTAACCTTAAATCAGCCTCCAAAGGACTACTACATTGTTGCCTCAACAAGGTTTTCCAGAAAAGTACGCGTAGCAACTGCAGTGTTGCATTATTCAAACTCTAAATCCCCAGCTTCTGGACCTTTGCCTAGTTCCCCTATTTACCAATATCACTGGTCTGTGAAGCAAGCTAGAACCTACAGATGGAATCTGACAGCAAATGCTGCAAGGCCTAATCCACAAGGGTCATACCATTATGGAAAAATAACTCCTACAAAGACAATTGTGTTGTCCAATTCAGCACCTTTGATTAATGGAAAACTTTGTTATGCTGTCAACAAGGTTTCCTATGTTAACCCTGATACCCCTCTCAAGCTTGCTGATTACTTCAACATTCCCGGAATCTACAGTGTTGATTCAATCCAAAGCATTCCTTCTGATAATACTCCCACATCCATAGCCACCTCCGTAGTGCCAACTTCTCTCCATGATTTCATTGAGGTCATTTTTCAGAACAACGAAAACACCATGCAATCTTGGCATCTTGACGGTTATGACTTCTGGGTCGTGGGTTATGGTTTTGGCCAGTGGACCCCAGCCAAAAGAAGAACCTATAATCTAGTTGATGCCCTGACCAGGCACACTGCTCAGGTATACCCAAATGGTTGGACTACAATACTGGTGTCCTTGGACAACCAAGGTATATGGAATTTGAGGTCTGCAATATGGGAAAGGCAGTATCTTGGGCAGCAGATATAA
>Glyma05g17432.1 sequence type=predicted peptide gene model=Glyma05g17432 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MERNGIKQRKNSWQDGVLGTNCPIRPNSNYTYKFQAKDQIGTYTYFPSTSLHKAAGGFGGLHVYHRSVIPVPYPYPDGDFTLLIGDWYKTNHKVLRESLDSGKSLAFPDGLLINGQAHTTINGDQGKTYMFRISNVGLSTSINFRIQGHTLKLVEIEGSHIVQNTYDTLDVHVGQSAAMLVTLNQPPKDYYIVASTRFSRKVRVATAVLHYSNSKSPASGPLPSSPIYQYHWSVKQARTYRWNLTANAARPNPQGSYHYGKITPTKTIVLSNSAPLINGKLCYAVNKVSYVNPDTPLKLADYFNIPGIYSVDSIQSIPSDNTPTSIATSVVPTSLHDFIEVIFQNNENTMQSWHLDGYDFWVVGYGFGQWTPAKRRTYNLVDALTRHTAQVYPNGWTTILVSLDNQGIWNLRSAIWERQYLGQQI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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