SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G38905 | AT | Annotation by Michelle Graham. TAIR10: Low temperature and salt responsive protein family | chr2:16244218-16244472 REVERSE LENGTH=54 | SoyBase | E_val: 6.00E-28 | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0042538 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| KOG1773 | KOG | Stress responsive protein | JGI | ISS | |
| PTHR21659 | Panther | HYDROPHOBIC PROTEIN RCI2 (LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6)-RELATED | JGI | ISS | |
| PF01679 | PFAM | Uncharacterized protein family UPF0057 | JGI | ISS | |
| UniRef100_B9HLY6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Stress-induced hydrophobic peptide n=2 Tax=Populus RepID=B9HLY6_POPTR | SoyBase | E_val: 9.00E-25 | ISS |
| UniRef100_I1K216 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K216_SOYBN | SoyBase | E_val: 2.00E-27 | ISS |
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Glyma05g16860 not represented in the dataset |
Glyma05g16860 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g083700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g16860.1 sequence type=CDS gene model=Glyma05g16860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTCTGAAACTTTTCTCGAAGTGATATTGGCAATCCTGCTACCTCCTGTTGGTGTTTTCCTCCGTTATGGCTGTGGCGTGGAGTTCTGGATAGATCTGGTGCTCACCATACTGGGATACATACCTGGGATTATATATGCAATTTATGTATTGGTGGGATGA
>Glyma05g16860.1 sequence type=predicted peptide gene model=Glyma05g16860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSETFLEVILAILLPPVGVFLRYGCGVEFWIDLVLTILGYIPGIIYAIYVLVG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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