Glyma05g15215 - SoyBase

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Report for Sequence Feature Glyma05g15215

Feature Type:	gene_model
Chromosome:	Gm05
Start:	16649631
stop:	16650305
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g15215

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF00098	PFAM	Zinc knuckle	JGI		ISS
UniRef100_I1JM94	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JM94_SOYBN	SoyBase	E_val: 8.00E-21	ISS
UniRef100_Q2HU05	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic n=1 Tax=Medicago truncatula RepID=Q2HU05_MEDTR	SoyBase	E_val: 9.00E-09	ISS

Expression Patterns of Glyma05g15215

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g15215 not represented in the dataset	Glyma05g15215 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g15215 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g075300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g15215

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g15215

Limit To All Plant Sequences

>Glyma05g15215.1   sequence type=CDS   gene model=Glyma05g15215   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTAAAGAAAAGAAAGATAAAGATAAAAACTCTATTATCTGCTATGAATGCAAGAAGCCTGGACACTTCAAATTTGAGTGCCCAAAATTGGAGAAGGGTCAAGGCAAGAAGAAACATTACAAGACCAAAGAAAAGGAGGGTCTTATGATTACCTGGGAAGATCTGGATGACACTTCATCTGATGAGGATGATGAAGAAGCCAATATCTGCCTGATGGCAGATACAACCCTTGAAGAATCTAAATCAGATCAAGAAGATGAGAACTCTCAGGAGTTGGAAAACAAACTGAAAGATCTTCAAAAGGATCTAAAGGAGTTGAACGAACTTCATGATTATCAAAATGAAGAAAAAAATGATATGTGGATAGAATGTGCACAAGCATACAAAGATTATTAA

Predicted protein sequences of Glyma05g15215

Limit To All Plant Sequences

>Glyma05g15215.1   sequence type=predicted peptide   gene model=Glyma05g15215   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPKEKKDKDKNSIICYECKKPGHFKFECPKLEKGQGKKKHYKTKEKEGLMITWEDLDDTSSDEDDEEANICLMADTTLEESKSDQEDENSQELENKLKDLQKDLKELNELHDYQNEEKNDMWIECAQAYKDY*

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