Glyma05g15170 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma05g15170

Feature Type:	gene_model
Chromosome:	Gm05
Start:	16482865
stop:	16486405
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g15170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G14605	AT	Annotation by Michelle Graham. TAIR10: Mitochondrial transcription termination factor family protein \| chr4:8378815-8380564 FORWARD LENGTH=493	SoyBase	E_val: 0	ISS
GO:0006970	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to osmotic stress	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1267	KOG	Mitochondrial transcription termination factor, mTERF	JGI		ISS
PTHR13068	Panther	CGI-12 PROTEIN-RELATED	JGI		ISS
PF02536	PFAM	mTERF	JGI		ISS
UniRef100_G7IMU1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: mTERF domain-containing protein n=1 Tax=Medicago truncatula RepID=G7IMU1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K1Z7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K1Z7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g15170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g15170

Paralog	Evidence	Comments
Glyma19g22410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g15170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g075600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g15170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g15170

Limit To All Plant Sequences

>Glyma05g15170.1   sequence type=CDS   gene model=Glyma05g15170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGACTTTCTCCTCAATTCAGCCACCCCACCATTTTCGTTGCACAAGATTTTTCTCAAACACTACCACAAGGGCTCAACTTCCCTTTCCTGCAAAGGTCTTCTTTTGCCAGGCAAAATCTGACCTTCATGGTGGTGTTTTTTACTCAGGCATAGATGGATCGTTGAATTTAAAAGTGGTGTCTCCCACTCTATTAGTAGCAGAAAAGGAAGAAGCCAAGGCTGTGTTGACCTTGTTTTTGAAGAAACAAGGTTTGAGCAATGCAATTGCTGCTAGAACCAGCAAGAAGTCAGATCATTTTATTGATCACCTTGTCTCAAGGCTTCACTCTAAACACAAATCTTGGTATCTCGCAGGGAGAGAGCTTACAACTCTAGAGATCAGGGATGCACTTATCCCTTATCTTGAATCTCTTTTTGAAGAGCATGGAGACATCCTAGTGGATGTAGTGGAAAACTATCCAAATCCTCCTGGTAAGGATAAATCGGCTGTGCTGGTTCCTCCTTCTAATCCAGTGTTAGACTCTAAGAAGCTTAAAGCTGTGTCTCGAGTGAGTGAGACAGACCCCGATGGTGGAAATCTTCGCCCTCATATTGTCTATCTCATGGAACTTGGTATGGATATTGAGCAGATTAGGAGTATCACACGACGATTCCCATCTTTTGCCTACTATAGCTTGGAGGGTAAAATTAAGCCAGTGGTTGAGTTTTTTCTTGAACTTGGAGTGCCAAAAGAGAACATTCCCACTATCCTCACTAAAAGACCTCAATTATGTGGAATCAGTCTATCTGAAAATCTTAAACCCACCATGAAGTTTTTCGAATCTTTGGGTGTTGACAAAAACCAATGGCCAAAGGTGATCTATCGCTTCCCAGCACTGCTAACTTATAGCAGGCCAAAAGTGATGGAAAGCATAGATTTTCTCCTTGAATTAGGCCTCTCAGAAGAGGGTATAGGTAAGATTTTAACTCGCTGCCCCAATATTGTTAGTTACAGTGTAGAGGACAATCTCCGACCCACAGCTAAGTACTTCCGTTCTTTGGGGGTTGATGTTGGCATTCTTCTCTTCAGATGCCCACAGAATTTTGGTCTTAGCATTGAGACCAACCTAAAGCCTGTAACAGAATTTTTCTTGGAGAGGGGATACACTTTGGAAGAAATTGGGACCATGATTTCAAGATATGGAGCCTTGTATACATTCAGCTTGACTGAAAATTTGATACCAAAATGGGATTTCTTCTTGACCACAGGTTACCCAAAATCTGAGTTGGTTAAGTTCCCACAATATTTTGGGTACAATTTAGAGGAAAGGATTAAACCTAGATTTGAAATTATGACAAAATCTGGAGTGAAGTTACTGCTGAACCAGGTTCTTTCACTGTCAAGCAGCAACTTTGATGAAGCCTTGAAAAAGAAAATGAAGAAAATGCAAGTGAGTTAG

Predicted protein sequences of Glyma05g15170

Limit To All Plant Sequences

>Glyma05g15170.1   sequence type=predicted peptide   gene model=Glyma05g15170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKTFSSIQPPHHFRCTRFFSNTTTRAQLPFPAKVFFCQAKSDLHGGVFYSGIDGSLNLKVVSPTLLVAEKEEAKAVLTLFLKKQGLSNAIAARTSKKSDHFIDHLVSRLHSKHKSWYLAGRELTTLEIRDALIPYLESLFEEHGDILVDVVENYPNPPGKDKSAVLVPPSNPVLDSKKLKAVSRVSETDPDGGNLRPHIVYLMELGMDIEQIRSITRRFPSFAYYSLEGKIKPVVEFFLELGVPKENIPTILTKRPQLCGISLSENLKPTMKFFESLGVDKNQWPKVIYRFPALLTYSRPKVMESIDFLLELGLSEEGIGKILTRCPNIVSYSVEDNLRPTAKYFRSLGVDVGILLFRCPQNFGLSIETNLKPVTEFFLERGYTLEEIGTMISRYGALYTFSLTENLIPKWDFFLTTGYPKSELVKFPQYFGYNLEERIKPRFEIMTKSGVKLLLNQVLSLSSSNFDEALKKKMKKMQVS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain