Report for Sequence Feature Glyma05g15100
Feature Type: gene_model
Chromosome: Gm05
Start: 16338123
stop: 16339811
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g15100
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G05210 AT
Annotation by Michelle Graham. TAIR10: Surfeit locus protein 6 | chr5:1548198-1549534 FORWARD LENGTH=386
SoyBase E_val: 2.00E-98 ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
KOG2885
KOG
Uncharacterized conserved protein
JGI ISS
PTHR14369 Panther
SURFEIT LOCUS PROTEIN 6
JGI ISS
PF04935 PFAM
Surfeit locus protein 6
JGI ISS
UniRef100_B9RJ85 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Caldesmon, putative n=1 Tax=Ricinus communis RepID=B9RJ85_RICCO
SoyBase E_val: 3.00E-122 ISS
UniRef100_I1K1Z5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K1Z5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma05g15100
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma05g15100
Paralog Evidence Comments
Glyma19g22310 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g15100 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g075900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g15100
Coding sequences of Glyma05g15100
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g15100.1 sequence type=CDS gene model=Glyma05g15100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACCAAGAAGAAGAAACCAAGTGGTGGGGTTGTTGGAGAGGGTGATGATTTGGAGTCTCTCATACACAAGCACGCCCTTTTTTTCGATAAGTTGATCGAGTTGATTCCCGCCAAGTTCTATCTGCCAACTGATGACAAGGAGAAGCCATGGTTTCAGGGTCTCAGCAAGGCTGCAAAAGCTGAAGCAAAGAAAGAGACCAAGGAGAATATCAAGAAGTCTCGGAGGGATCGTTTAGACCCTGACAAACCCTCTGCAACTACCCTTGACCTTCTCAAGGAAAGTTTTGGAAAAGAGAAGGTGGATGACAGTGATGAAGAGCAGGGTGCCGCGGCGCCTAGGCCTGTTGTTTCTGGGATGAAAAGAGATGATGGGTCTGTGACTTATGAAGAGCTTCAGCAAAGGCTTCGTCGCAGGCTCGAAGAGTTTCGTGCAAGTCGTAATACTGGGAATTCGGATAGGAAGAGGGATGAAAGAAATGCTAGGAGAGGATATAAGGACAAGAAACGCAAGAGGGATGAAGAAACTGAGGAAGGTAACCCTGTGCGTGGTGAATTGGCGGCGGAGAAAGTGAAGAAGGATGCTGCAGAGGCCTCCAAGGATCTTGTGTTTGGACATGTTAAACTTCAGAATGAGGAAATGCTAGGGAAAAAGAAGAGGAAGGTTTCAAAGCATAAGGAACTTGAAAGGGCTAAGAAATTGGAAGAAGTGAAGAAGAAAGATCCTGAGAAGGCTGAAGCTTTTGCTAAAAAGCAATCATGGAAAGCAGCAATGGATAGAGCTTCAGGGGTTAAGGTCCATGATGATCCCAAACTGTTGCATAAAAGCATTCATAAAGAGAAGAAGAAACAGCAGAAGAATGCGGAGAAATGGAAGGATAGAATTCAAACGAGGGACCAGTTGAAGGCAGAGAAGCAGCAGAAAAGGTCCGAGAATATATCTGCAAGGATTCATGAGAAGAAAATGCGGAAAATTGCCAAAAGGGAGAAAAAACTTATGCGGCCTGGCTTTGAAGGTCGCAAAGAAGGTTTTATGAATGATGGTGGTTCCAGCTAA
Predicted protein sequences of Glyma05g15100
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g15100.1 sequence type=predicted peptide gene model=Glyma05g15100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTKKKKPSGGVVGEGDDLESLIHKHALFFDKLIELIPAKFYLPTDDKEKPWFQGLSKAAKAEAKKETKENIKKSRRDRLDPDKPSATTLDLLKESFGKEKVDDSDEEQGAAAPRPVVSGMKRDDGSVTYEELQQRLRRRLEEFRASRNTGNSDRKRDERNARRGYKDKKRKRDEETEEGNPVRGELAAEKVKKDAAEASKDLVFGHVKLQNEEMLGKKKRKVSKHKELERAKKLEEVKKKDPEKAEAFAKKQSWKAAMDRASGVKVHDDPKLLHKSIHKEKKKQQKNAEKWKDRIQTRDQLKAEKQQKRSENISARIHEKKMRKIAKREKKLMRPGFEGRKEGFMNDGGSS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
