Glyma05g14860 - SoyBase

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Report for Sequence Feature Glyma05g14860

Feature Type:	gene_model
Chromosome:	Gm05
Start:	16154311
stop:	16156851
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g14860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G50120	AT	Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF247) \| chr3:18585157-18587246 REVERSE LENGTH=531	SoyBase	E_val: 3.00E-42	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF03140	PFAM	Plant protein of unknown function	JGI		ISS
UniRef100_UPI0002339585	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339585 related cluster n=1 Tax=unknown RepID=UPI0002339585	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g14860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g14860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g076400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g14860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g14860

Limit To All Plant Sequences

>Glyma05g14860.2   sequence type=CDS   gene model=Glyma05g14860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTGATACACAACACCTCAGCCTAAAGTTTGACCAACTAGAGAAAGCAAAGCAAATTGCACAAAATTCAGCCCCAAAGATACAAAGGGTAGCACATCATCTGCGAGATCGAAAACATTTTGCCAAGCATTACTTACCCAGGTTGGTGTCAATTGGTCCAATCCATCATGGTGCAGAGAAACTGCAGCTGGGAGAAAAATACAAGGTTATGTGGGCAGCAATGTACCTCGAACGCACCAAACAAGATGCACAAACTCTGTACCAAAAGATTGCATCAAATATTGAACAACTGAAGGAACTGTTTTCTGAGGATGTTGTTAGAGACTTCCCTGATGATGAAAAGCTCTCGTGGTCGTGGATGCTATTTGTGGATGGATGTTCTCTGCTACAAATCTTGGAGAAGGGAAAACTTCATTATCCAAAAGAAATGAATGTAAAGGTTGATCAACTGGCTCTTGTGTGGCAGGATGTGCTCTTGTTAGAGAACCAGCTTCCCTATCAAGTGCTTAAACTGTTGTCAGACCACGGGAATGATGCAAAGCTAGTAAAGAGCATGAATGAGTTTCTTAAGTGCCATCATTTGTCACCAGTTAGACAGGAGCAAAAAGCTAAGAAACAGGACATGGGCAATTTTAAAAGCAAGGATGAAGATAGAGCATTGACTGAAGAAGAGTACAGAAGCGTTTGTGTAAAGAACGAAGACACCCTAAAAGGAGAACATAGAATAGAAATAACCCAGGAATCACCTATTCATCTTCTTGATCAGCTTCGCAGATATGTCCTTGATGACCCACATGAGAAAAAGGACACAGGAAGGGACAAAAGGAAGAAGAATACAAATGAAGACTTGGACATGATAACATACAGGAACAAGAAAAGGGAGAACAGCACAAATGAAGACTTGGATATGACAACATACAGGAACAAGAAAAAGGAGCAGAACACAAATGAAGACTTGGACATGACAACATACAGGAACATACAAGAGCTGAGAGCAGCAGGGATTAAACTTAAGAGAGAAAAGTCACGCAGGCTCAGAGACGTGTCTTTCTCTTATCGCTGGATGTGTTTGTGCGCGGAACTGATGCTTCCTGAGATCACAGTTGATGACACAACAGCTCCTACATTTCTCAACTTGATAGCATATGAGATGTGTCCTGATTTTGGCAACAACTTCGAGATTTGTTCCTTCGTGGCCTTCATGGACTCGCTTATCGACCATCCTGAGGATGTGAAGGAGCTGAGAGCAGCAAAGGTTCTGCACAATGCCCTTGGGAGTGATGAGGAAGTGGCAAAGCTCTTCAACACCATAAGCACTGACTTGGTGCCCGACACGGAGAGTTATTCGCATGTTAGATGCCAAATTGAGAAGCATTATAGGAGCAAATACAGGACATGGATAGCTCTTGGTTATCATACGTACTTTAGTAACCCTTGGGCAATCATTGCTTTCCATGCTGCTCTTGTTGCTCTAGTTCTCACTTTCATCCAAACTTGGCTTGCTATTCACCCTGTTGGCTAG

Predicted protein sequences of Glyma05g14860

Limit To All Plant Sequences

>Glyma05g14860.2   sequence type=predicted peptide   gene model=Glyma05g14860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTDTQHLSLKFDQLEKAKQIAQNSAPKIQRVAHHLRDRKHFAKHYLPRLVSIGPIHHGAEKLQLGEKYKVMWAAMYLERTKQDAQTLYQKIASNIEQLKELFSEDVVRDFPDDEKLSWSWMLFVDGCSLLQILEKGKLHYPKEMNVKVDQLALVWQDVLLLENQLPYQVLKLLSDHGNDAKLVKSMNEFLKCHHLSPVRQEQKAKKQDMGNFKSKDEDRALTEEEYRSVCVKNEDTLKGEHRIEITQESPIHLLDQLRRYVLDDPHEKKDTGRDKRKKNTNEDLDMITYRNKKRENSTNEDLDMTTYRNKKKEQNTNEDLDMTTYRNIQELRAAGIKLKREKSRRLRDVSFSYRWMCLCAELMLPEITVDDTTAPTFLNLIAYEMCPDFGNNFEICSFVAFMDSLIDHPEDVKELRAAKVLHNALGSDEEVAKLFNTISTDLVPDTESYSHVRCQIEKHYRSKYRTWIALGYHTYFSNPWAIIAFHAALVALVLTFIQTWLAIHPVG*

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