SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G27170 | AT | Annotation by Michelle Graham. TAIR10: chloride channel B | chr3:10024147-10026921 FORWARD LENGTH=780 | SoyBase | E_val: 0 | ISS |
| GO:0006821 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloride transport | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009705 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005216 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ion channel activity | SoyBase | N/A | ISS |
| GO:0005247 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: chloride transport | SoyBase | N/A | ISS |
| GO:0005253 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: anion channel activity | SoyBase | N/A | ISS |
| GO:0009671 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nitrate:hydrogen symporter activity | SoyBase | N/A | ISS |
| KOG0474 | KOG | Cl- channel CLC-7 and related proteins (CLC superfamily) | JGI | ISS | |
| PTHR11689 | Panther | CHLORIDE CHANNEL | JGI | ISS | |
| PTHR11689:SF11 | Panther | CHLORIDE CHANNEL | JGI | ISS | |
| PF00571 | PFAM | CBS domain | JGI | ISS | |
| PF00654 | PFAM | Voltage gated chloride channel | JGI | ISS | |
| UniRef100_Q0IJ86 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chloride channel n=1 Tax=Glycine max RepID=Q0IJ86_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q0IJ86 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Chloride channel n=1 Tax=Glycine max RepID=Q0IJ86_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g14760 not represented in the dataset |
Glyma05g14760 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g077100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g14760.1 sequence type=CDS gene model=Glyma05g14760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGAGGAATCCAGTTTGCTTAAAGAAAGCACATCAATCAATGACACCAATATGGTGGAAGAGGTTGAAGAAAGGGATCCAGAAAGCAATCCATTGAATGAGCCACTTCTCAAGAGGAACAGGACTTTGTCTTCCAATCCACTTGCTCTTGTTGGAGCAAAAGTTTCCTACATAGAAAGCTTGGACTACGAGATCAATGAGAATGACCTGTTCAAACAAGATTGGAGGAGCAGATCAAGAACTCAAGTGTTGCAATACATATTCTGGAAATGGACTCTGGCATTCCTTGTTGGACTTCTCACTGGTGTCATAGCCACTCTTATCAATCTTGCTGTTGAGAACATTGCCGGGTACAAGTTTCTTGCTGTTGTCAACTTTATCCAAAAAGAAAGGTACTTGAGAGGTTTCCTATATTTCACGGGCATTAATTTCCTTTTGACATTTGTTGCTTCTATTCTGTGTGTGTGTTTTGCACCCACGGCAGCTGGGCCTGGAATACCTGAAATCAAAGCTTATCTTAATGGTGTTGATACTCCCAACATGTATGGTGCCACCACATTGTTTGTTAAGATAATTGGAAGCATTGGAGCTGTATCTGCAGGCCTAGATTTAGGAAAAGAAGGGCCATTGGTACACATTGGAAGCTGCATTGCTTCCTTACTAGGCCAAGGAGGCCCTGACAATTACAGGATCAAGTGGCGCTGGCTACGGTATTTCAACAACGATCGTGACCGTCGCGATCTTATTACTTGTGGTGCTTCTTCAGGGGTTTTTCTCTTTGCTCTTGAAGAGGTGGCAACTTGGTGGAGAAGTGCTCTCCTCTGGAGAACATTTTTCAGCACAGCTGTGGTGGTGGTAGTGCTAAGGGCCTCTATTGAACTTTGCCACAAAGGCAAGTGTGGTCTTTTTGGTGAAGGAGGGCTCATCATGTATGATGTGAGCGATGTCACTGTTAGGTACAATGTGATGGATATCATCCCTGTTGTTATCATTGGAGTCCTAGGTGGGGTATTGGGAAGCCTTTACAACTATCTTCTCCATAAGGTCCTCCGTGTCTACAATCTCATCAATCAGAAAGGAAAAATGTACAAGCTCCTCCTCAGTCTTTCAGTTGCAATCTTCACATCAGCGTGCCAATATGGTCTCCCATTCCTAGCAAAATGTACCCCTTGTGATCCATCCCTCTCAGATGTGTGCCCCACCAACGGGCGTTCTGGAAACTTCAAACAATTCAACTGCCCAAAAGGCTACTACAATGATCTTGCTACTCTTCTTCTGACCACCAATGATGATGCTGTTAGAAACATATTCTCAACCAACACCCCTCTTGAATACCAACCCTCCTCCATCATAATTTTCTTTGCACTGTATTGCATACTAGGACTAATCACCTTTGGGATTGCTGTGCCATCAGGGCTCTTCCTCCCCATCATTCTCATGGGTTCCGGCTACGGTCGCCTTCTCGGCATCCTCATGGGGCCTCACACAAACATTGATCAAGGGCTGTTTGCAGTCCTTGGTGCAGCCTCACTCATGGCTGGATCCATGAGAATGACTGTGTCCCTTTGTGTGATCTTCCTTGAACTAACCAACAACCTTCTCCTACTACCAATAACCATGATTGTTCTCCTCATAGCTAAAACTGTTGGAGACAGCTTCAACCCAAGCATCTATGAGATCATATTGCACCTGAAAGGCCTCCCTTTCATGGATGCAAACCCTGAGCCATGGATGAGAAACCTCACTGTGGGTGAGCTTGTTGATGTGAAGCCAGCAGTGGTTAGCTTCAAAGGAGTAGAAAAGGTGGCTAACATAGTCAATGCCTTGAAAAACACTACACATAATGGTTTTCCTGTGATGGATTGTGGGCTGGTGCCAACCACAGGAGTGGCCAATGAGGCTACAGAACTGCACGGAATCATTCTAAGAGCACACCTTATCCAAGTGCTGAAGAAGAAGTGGTTCTTGAAGGAGAGAAGGAGAACTGAGGAATGGGAAGTTAGAGAGAAATTTACATGGGTGGAGCTGGCTGAGAGAGAAGGGAATATTGAAGATGTGGCTGTGACAAAAGAAGAAATGGAGATGTTTGTTGATTTGCATCCTCTCACCAATACTACACCCTTCACAGTGCTAGAGAGTATGTCAGTTGCAAAAGCAATGGTTCTCTTCAGACAAGTAGGACTTCGCCATATGCTTGTTGTGCCAAAGTATCAAGCTTCAGGGGTATCTCCTGTGATTGGGATCCTGACCCGGCAAGATCTACTGGCATACAACATTCTGACAGTGTTTCCTCACCTGGCAAAATCAAAGAGGAAGTGA
>Glyma05g14760.1 sequence type=predicted peptide gene model=Glyma05g14760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGEESSLLKESTSINDTNMVEEVEERDPESNPLNEPLLKRNRTLSSNPLALVGAKVSYIESLDYEINENDLFKQDWRSRSRTQVLQYIFWKWTLAFLVGLLTGVIATLINLAVENIAGYKFLAVVNFIQKERYLRGFLYFTGINFLLTFVASILCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGATTLFVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITCGASSGVFLFALEEVATWWRSALLWRTFFSTAVVVVVLRASIELCHKGKCGLFGEGGLIMYDVSDVTVRYNVMDIIPVVIIGVLGGVLGSLYNYLLHKVLRVYNLINQKGKMYKLLLSLSVAIFTSACQYGLPFLAKCTPCDPSLSDVCPTNGRSGNFKQFNCPKGYYNDLATLLLTTNDDAVRNIFSTNTPLEYQPSSIIIFFALYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGILMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGELVDVKPAVVSFKGVEKVANIVNALKNTTHNGFPVMDCGLVPTTGVANEATELHGIILRAHLIQVLKKKWFLKERRRTEEWEVREKFTWVELAEREGNIEDVAVTKEEMEMFVDLHPLTNTTPFTVLESMSVAKAMVLFRQVGLRHMLVVPKYQASGVSPVIGILTRQDLLAYNILTVFPHLAKSKRK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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