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Report for Sequence Feature Glyma05g14731

Feature Type:gene_model
Chromosome:Gm05
Start:15872418
stop:15876684
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g14731
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G62780AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 94 Blast hits to 94 proteins in 35 species: Archae - 6; Bacteria - 10; Metazoa - 21; Fungi - 2; Plants - 48; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr1:23249349-23251066 REVERSE LENGTH=237 SoyBaseE_val: 8.00E-14ISS
GO:0000023GO-bp Annotation by Michelle Graham. GO Biological Process: maltose metabolic process SoyBaseN/AISS
GO:0006098GO-bp Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009902GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast relocation SoyBaseN/AISS
GO:0010027GO-bp Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization SoyBaseN/AISS
GO:0019252GO-bp Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0034660GO-bp Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1K1Y5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K1Y5_SOYBN SoyBaseE_val: 8.00E-108ISS
UniRef100_Q9SI71UniRef Annotation by Michelle Graham. Most informative UniRef hit: F23N19.15 n=1 Tax=Arabidopsis thaliana RepID=Q9SI71_ARATH SoyBaseE_val: 2.00E-11ISS

Expression Patterns of Glyma05g14731
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g14731 not represented in the dataset
Glyma05g14731 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g14731 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g077300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g14731
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma05g14731
>Glyma05g14731.2   sequence type=transcript   gene model=Glyma05g14731   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAATCCTAGAGGCTCATTAATGGATTCATTCTTAGATGAAGGGTAATATTGCTAAAAGTTAGATTATTTTGAAGTTTGCAAATAGGAATGCTTCAACCTGTTTATTGAATGCTGGTGTATCCTTTTCATATTGAGTTGCACAGACAGTTTTGAAGCCATTTAAATAAAGTCAAATGCTTATAAAAATTATCAACTTCTACACTTGCCTACAACTTGTGTTTGAAAATTTTTTGTGCGAAGGAAGGACCCAGAAGGCGTGCTTGGTCCACCCCAAACGGGGCATTTCACCAGGTTCGAGTTTAAGAGGCGCCTCGAGAGAGACGCAGATGCCCGCGAAGCCTTCCAACATTAAGTCCGTGAAGATAAAGAATGCCATCAAGCCCTTCGACAAGTATTCATTCATTTCTCTCTCAACTCCCTACCCTTTCTCTTTATTTATTCCATTATTCATTTTTGTCCTTTACTTAGTCTCGTGATGTACCCGATACTATGCAATACCTCATTGAATACTTCCTTGACACTGAAGCTCAGGAGATTAAGTTTGAGATTGCAAGAATGAGACCAAGATTCCTACTTTTCAACCTTTTCTTCCTTTTTTTAATCTAGCTCAATCAGTTTTGCATGTCCCATCGAATTCACTCTGCAGATTGAATGAGGAATTCTTTGCACAACTCAAATTCGAGTCAGGACAACTTTGATTTGATGTTGACAAAACATAGGTGAACCTGGTTTCGTTTCGGATCCTTATATTTGAGTTCATCAAAACATTCTAGTGTCTGGTAATTTTACACTGATGGTTTCTGCATCTCATGGAGGATAGACAGATTGAGCTGGAGGCTCTAGAGAAAGCCATACAAGAAGGATTAGAAGCCTATGATAAGATGCAAGGTGAACTTGTAAAAGCCAGGGCAAGCCTAACCAAAATCTTGACATCAAAGGATGCCAAAGTAACTGTTGACAAGAATGATGACATTTATGAAGTATGTCATCGTGTCTTCAAACAAAATGATAAATCTATTCATATTCAACCTAGATACTGTTTGAAATGTGGTTCTTACTGTGAGTTGGAGTCTTTGCATGCTGCAGTTGGTAAAGCTTTAATCCTCTTATTTTTAATCCTGATGAGTTCATTGTAAATACTAATGGCAGCTTAATTTCGAGCACTTTGCATTCTGATATATGGACATTACAGGTTGCAGGATGCAATATTGTCGCAACAAATTTGAATCAAACATCCCATATTCTATTATTACCTTTGTTCTATTGATATTTTGGATTTTCAGGCACCCCTTGTATTACAGACTGTGTGATGGCAGAACTCGAGAAGTTAGGCCAAAAATATCGTGTAGCTCTAAGGTAGATGTTATGTCTTCTTGATTATTAGTTTATATTTTCAAACATTTGAGATTTACATATAAAAAGGGAAATCCATTGCATGAGGGGGTTCCCTTAAAGTGAGGTATGGGGAGGGTAGATGTATGTACCCATGATTTGGGTTTCTATATTACTGATTCCCGGTGTTCCAATAATGTACATCACCAAATGCAAGTACTCAATTGAGCGATTGCCTAAAGCAACAATTCGTGGAGGTAGATACTCTTATTTAGTGAAATTTATAGCGACTAACGTGAATTTGAACTTAGTTTATTGGACAACGCAACATTGCATAGCTCTTTTTAGAAACTACATAAATTAAGCTTCATTGACTTTGTCCCAATCTTTCTGTAAATATATAATGTACAATATATTACACATGAACATGACTTTGCCACCTGCTTAGAGAAATACAACTTGAATTCATGTGCAAATGGATAATAACAATGGTTTTTTTTATGTATATAACCGTGGTCAGTATGATCCACTATTAACATAGAAGACAATTACAAATCCTATGCTATCTCATGTTTGTTATAATGATATGTTTTGGGTAAGTTTAAAGTTAATTCTGATGCAATCCTACCCCCCAAGGATATTGGATAGAACACTCCAAGAGGATTGGGCTAGAGCTACTAAAGAAGACCCTAGGGTTCTCATGAACCTTAGGGTAGATTTTTGAGCCCATGGGTCAAGGTTGGATTCACTCTTCTTTGTAAATGTTAGAATTGGTCTTTCCTTCTTTTAGGCCTTGTATTTTGGCCATTCTAGTAGTATAGGGTTTTAACCTTGTATTTCAGGATATTTTGAGTAGTCTTTGTAATAGGAACTTTTTTTTATATTTTCATGTATTTTGGCATGGGGTGAGCTTAGCTATTATAGGGGGTGTGTGTAGCTAAGCTCTAGCTTCTTTAGGAATCTTCTCAAGGAAGCTTCTCAAGGAGGTGAGCTTAGTTATTAGAGGAGTGTGTGTAGCTAAGCTCAAGCTTGTCAAGGAAGTTTTCTCAAAGAAGCTTCTCAAGGAAGTTTTCTCAAGGAAGTTACCTAGTCTATAAATAGAAGCATGTGTAACACTTGTTGTAACTTTGATGAATGAAAGTCTTATGAGACACACTTCAAAGTTCAACTTCTCTCCCTCTTTTATTCCTTCAATTTCGTGCTCCCCCCTTCTCTCTTTCTTTTCCTCCATTGAAGCATCATCTCCAAGCTTCTTATCCAAGGCTCATCTTGGTGGTGAAGCTCCTTCTTCCATGGCTTATTCCTTAATGGATGGCGCCTC
Coding sequences of Glyma05g14731
>Glyma05g14731.1   sequence type=CDS   gene model=Glyma05g14731   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGATAGACAGATTGAGCTGGAGGCTCTAGAGAAAGCCATACAAGAAGGATTAGAAGCCTATGATAAGATGCAAGGTGAACTTGTAAAAGCCAGGGCAAGCCTAACCAAAATCTTGACATCAAAGGATGCCAAAGTAACTGTTGACAAGAATGATGACATTTATGAAGTATGTCATCGTGTCTTCAAACAAAATGATAAATCTATTCATATTCAACCTAGATACTGTTTGAAATGTGGTTCTTACTGTGAGTTGGAGTCTTTGCATGCTGCAGTTGGTTGCAGGATGCAATATTGTCGCAACAAATTTGAATCAAACATCCCATATTCTATTATTACCTTTGTTCTATTGATATTTTGGATTTTCAGGCACCCCTTGTATTACAGACTGTGTGATGGCAGAACTCGAGAAGTTAGGCCAAAAATATCGTGTAGCTCTAAGGTAGATGTTATGTCTTCTTGA

>Glyma05g14731.2   sequence type=CDS   gene model=Glyma05g14731   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGATAGACAGATTGAGCTGGAGGCTCTAGAGAAAGCCATACAAGAAGGATTAGAAGCCTATGATAAGATGCAAGGTGAACTTGTAAAAGCCAGGGCAAGCCTAACCAAAATCTTGACATCAAAGGATGCCAAAGTAACTGTTGACAAGAATGATGACATTTATGAAGTATGTCATCGTGTCTTCAAACAAAATGATAAATCTATTCATATTCAACCTAGATACTGTTTGAAATGTGGTTCTTACTGTGAGTTGGAGTCTTTGCATGCTGCAGTTGGTAAAGCTTTAATCCTCTTATTTTTAATCCTGATGAGTTCATTGTAA
Predicted protein sequences of Glyma05g14731
>Glyma05g14731.1   sequence type=predicted peptide   gene model=Glyma05g14731   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDRQIELEALEKAIQEGLEAYDKMQGELVKARASLTKILTSKDAKVTVDKNDDIYEVCHRVFKQNDKSIHIQPRYCLKCGSYCELESLHAAVGCRMQYCRNKFESNIPYSIITFVLLIFWIFRHPLYYRLCDGRTREVRPKISCSSKVDVMSS*

>Glyma05g14731.2   sequence type=predicted peptide   gene model=Glyma05g14731   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDRQIELEALEKAIQEGLEAYDKMQGELVKARASLTKILTSKDAKVTVDKNDDIYEVCHRVFKQNDKSIHIQPRYCLKCGSYCELESLHAAVGKALILLFLILMSSL*






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