SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G27150 | AT | Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein | chr3:10009692-10010960 REVERSE LENGTH=422 | SoyBase | E_val: 6.00E-126 | ISS |
| GO:0000041 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transition metal ion transport | SoyBase | N/A | ISS |
| GO:0006826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron ion transport | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009691 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinin biosynthetic process | SoyBase | N/A | ISS |
| GO:0010106 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation | SoyBase | N/A | ISS |
| GO:0010167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nitrate | SoyBase | N/A | ISS |
| GO:0015706 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrate transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR24413 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24413:SF218 | Panther | JGI | ISS | ||
| PF01344 | PFAM | Kelch motif | JGI | ISS | |
| UniRef100_B9GJS6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F-box family protein n=1 Tax=Populus trichocarpa RepID=B9GJS6_POPTR | SoyBase | E_val: 9.00E-151 | ISS |
| UniRef100_I1K1Y3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1K1Y3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g14690 not represented in the dataset |
Glyma05g14690 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g077700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g14690.2 sequence type=CDS gene model=Glyma05g14690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGGAACTTTGGTGGTGGCAGTTGCAGGTTTTCTCACAATTCCTCAGCTGAAAAAATGAGAATTCTGGAAGAGTCACCTTCATATGCCCATGGTTCCTCCTCCGCAGGTCAAGAGCCTCAGGATGCAGATTATGATGTTCCATGTCTCAGTGATGAGCTAGAGACCATGATACTGGCAAGATTTCCAATACCAAAACACTGGAAGATGTGTTGTCTAAGCAAGCGGTTTCTGACCCTTCTGAAGAGTGGTGAAATCTACAAAATCAGGAGGGTGATAGGGTTCAAGGAGCCATCAGTTTTTATGTTAGCAAGTGGAGAGAAGAATTGGTGTGCATTTGATGGCCACTTCAGGTCCTGCAGGAAGCTTCCTATCATTCCATCAGATTACAATTTTGAGTGGGGGAACAAGGAGTCATTTTCTGCAGGGACCTATATCTTTGTTTCAGGAAAAGAGGTTGATGGTGGTGTTGTTTGGAGGTATGAGTTAGCAACAAATGAGTGGTTCAAGGGTCCTTCAATGCTCAGTCAAAGGTGCCTCTTTGCATCAGCCTCTTGTGGTACCATGGCTTTTGTTGCTGGTGGAATTGAGACAACAACTAGGGAGGTTTTGAGTTCTGCTGAGAAATACAACTCAGAAAGCCACATTTGGGAGCAACTTCCAAGGATGATACAAAAGAGGAAGTCTTGCTCAGGTTGTTACTTGGACAACAAATTTTATGTGCTTGGAGGGCAAAACGAGCAGAAGAAAGACCTCACTTGTGGGGAATTCTATGATGAAGACACAAACACTTGGAACTTGGTTCCTGCCATGTTCAAAGATATTCCTCTTTCAACTCCAAGATCCCCTCCTCTTATTGCTGTTGCCAACAATGAGTTGTATACCCTTGACGCTTCCTCAAATGAGCTAAAGGTTTATCTTAAGAAAAGCAACTCATGGAAGAAGTTAGGACCAGTTCCAGTGAGAGCTGATGCACGACTAGGTTGGGGTGTGGCTTTCAAATCCTTGGGAAATGAGTTGCTTCTTATTGGGGATACCTCTGCCTCCTACTCACAACGTGCCGTGATGAAGATATACACTTGCTTCCCTGATCCACATGTTGAGAAATTGAAGTGGAAGCAAATTGTATGTAGCAGCACCAACCTTCACCCCTTTATTCACAATTGTGCTGTCATGTTAGCTTGA
>Glyma05g14690.2 sequence type=predicted peptide gene model=Glyma05g14690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MWNFGGGSCRFSHNSSAEKMRILEESPSYAHGSSSAGQEPQDADYDVPCLSDELETMILARFPIPKHWKMCCLSKRFLTLLKSGEIYKIRRVIGFKEPSVFMLASGEKNWCAFDGHFRSCRKLPIIPSDYNFEWGNKESFSAGTYIFVSGKEVDGGVVWRYELATNEWFKGPSMLSQRCLFASASCGTMAFVAGGIETTTREVLSSAEKYNSESHIWEQLPRMIQKRKSCSGCYLDNKFYVLGGQNEQKKDLTCGEFYDEDTNTWNLVPAMFKDIPLSTPRSPPLIAVANNELYTLDASSNELKVYLKKSNSWKKLGPVPVRADARLGWGVAFKSLGNELLLIGDTSASYSQRAVMKIYTCFPDPHVEKLKWKQIVCSSTNLHPFIHNCAVMLA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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