Glyma05g14690 - SoyBase

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Report for Sequence Feature Glyma05g14690

Feature Type:	gene_model
Chromosome:	Gm05
Start:	15813446
stop:	15815953
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g14690

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G27150	AT	Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein \| chr3:10009692-10010960 REVERSE LENGTH=422	SoyBase	E_val: 6.00E-126	ISS
GO:0000041	GO-bp	Annotation by Michelle Graham. GO Biological Process: transition metal ion transport	SoyBase	N/A	ISS
GO:0006826	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion transport	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009691	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin biosynthetic process	SoyBase	N/A	ISS
GO:0010106	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation	SoyBase	N/A	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24413	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24413:SF218	Panther		JGI		ISS
PF01344	PFAM	Kelch motif	JGI		ISS
UniRef100_B9GJS6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box family protein n=1 Tax=Populus trichocarpa RepID=B9GJS6_POPTR	SoyBase	E_val: 9.00E-151	ISS
UniRef100_I1K1Y3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1K1Y3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g14690

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g14690 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g077700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g14690

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g14690

Limit To All Plant Sequences

>Glyma05g14690.2   sequence type=CDS   gene model=Glyma05g14690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGAACTTTGGTGGTGGCAGTTGCAGGTTTTCTCACAATTCCTCAGCTGAAAAAATGAGAATTCTGGAAGAGTCACCTTCATATGCCCATGGTTCCTCCTCCGCAGGTCAAGAGCCTCAGGATGCAGATTATGATGTTCCATGTCTCAGTGATGAGCTAGAGACCATGATACTGGCAAGATTTCCAATACCAAAACACTGGAAGATGTGTTGTCTAAGCAAGCGGTTTCTGACCCTTCTGAAGAGTGGTGAAATCTACAAAATCAGGAGGGTGATAGGGTTCAAGGAGCCATCAGTTTTTATGTTAGCAAGTGGAGAGAAGAATTGGTGTGCATTTGATGGCCACTTCAGGTCCTGCAGGAAGCTTCCTATCATTCCATCAGATTACAATTTTGAGTGGGGGAACAAGGAGTCATTTTCTGCAGGGACCTATATCTTTGTTTCAGGAAAAGAGGTTGATGGTGGTGTTGTTTGGAGGTATGAGTTAGCAACAAATGAGTGGTTCAAGGGTCCTTCAATGCTCAGTCAAAGGTGCCTCTTTGCATCAGCCTCTTGTGGTACCATGGCTTTTGTTGCTGGTGGAATTGAGACAACAACTAGGGAGGTTTTGAGTTCTGCTGAGAAATACAACTCAGAAAGCCACATTTGGGAGCAACTTCCAAGGATGATACAAAAGAGGAAGTCTTGCTCAGGTTGTTACTTGGACAACAAATTTTATGTGCTTGGAGGGCAAAACGAGCAGAAGAAAGACCTCACTTGTGGGGAATTCTATGATGAAGACACAAACACTTGGAACTTGGTTCCTGCCATGTTCAAAGATATTCCTCTTTCAACTCCAAGATCCCCTCCTCTTATTGCTGTTGCCAACAATGAGTTGTATACCCTTGACGCTTCCTCAAATGAGCTAAAGGTTTATCTTAAGAAAAGCAACTCATGGAAGAAGTTAGGACCAGTTCCAGTGAGAGCTGATGCACGACTAGGTTGGGGTGTGGCTTTCAAATCCTTGGGAAATGAGTTGCTTCTTATTGGGGATACCTCTGCCTCCTACTCACAACGTGCCGTGATGAAGATATACACTTGCTTCCCTGATCCACATGTTGAGAAATTGAAGTGGAAGCAAATTGTATGTAGCAGCACCAACCTTCACCCCTTTATTCACAATTGTGCTGTCATGTTAGCTTGA

Predicted protein sequences of Glyma05g14690

Limit To All Plant Sequences

>Glyma05g14690.2   sequence type=predicted peptide   gene model=Glyma05g14690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWNFGGGSCRFSHNSSAEKMRILEESPSYAHGSSSAGQEPQDADYDVPCLSDELETMILARFPIPKHWKMCCLSKRFLTLLKSGEIYKIRRVIGFKEPSVFMLASGEKNWCAFDGHFRSCRKLPIIPSDYNFEWGNKESFSAGTYIFVSGKEVDGGVVWRYELATNEWFKGPSMLSQRCLFASASCGTMAFVAGGIETTTREVLSSAEKYNSESHIWEQLPRMIQKRKSCSGCYLDNKFYVLGGQNEQKKDLTCGEFYDEDTNTWNLVPAMFKDIPLSTPRSPPLIAVANNELYTLDASSNELKVYLKKSNSWKKLGPVPVRADARLGWGVAFKSLGNELLLIGDTSASYSQRAVMKIYTCFPDPHVEKLKWKQIVCSSTNLHPFIHNCAVMLA*

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