Glyma05g14680 - SoyBase

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Report for Sequence Feature Glyma05g14680

Feature Type:	gene_model
Chromosome:	Gm05
Start:	15799689
stop:	15801485
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g14680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G28980	AT	Annotation by Michelle Graham. TAIR10: CDK-activating kinase 1AT \| chr4:14288471-14290102 FORWARD LENGTH=479	SoyBase	E_val: 2.00E-26	ISS
GO:0000079	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cyclin-dependent protein kinase activity	SoyBase	N/A	ISS
GO:0000278	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitotic cell cycle	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0010078	GO-bp	Annotation by Michelle Graham. GO Biological Process: maintenance of root meristem identity	SoyBase	N/A	ISS
GO:0010440	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal lineage progression	SoyBase	N/A	ISS
GO:0042023	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication	SoyBase	N/A	ISS
GO:0045736	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of cyclin-dependent protein kinase activity	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
GO:0019912	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase activating kinase activity	SoyBase	N/A	ISS
PTHR24056	Panther	CELL DIVISION PROTEIN KINASE	JGI		ISS
PTHR24056:SF88	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7L878	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase n=1 Tax=Medicago truncatula RepID=G7L878_MEDTR	SoyBase	E_val: 1.00E-25	ISS
UniRef100_I1K5W1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K5W1_SOYBN	SoyBase	E_val: 2.00E-32	ISS

Expression Patterns of Glyma05g14680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g14680 not represented in the dataset	Glyma05g14680 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g14680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma05g14680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g14680

Limit To All Plant Sequences

>Glyma05g14680.1   sequence type=CDS   gene model=Glyma05g14680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTACCTCAAAGAAAACCGAGAAGGTCAGATTGAGCTTCGTTCTCTACCGAAACCGCGAGACAAACTATGGCAGTTCGTGGTGGCTACTGGTGGTTGTGGGTGGTGAAGAAGAAGCTTGGGACACCAAATTTCGAGAAGATCCAACGGGCTTCCCAGACATTGTCGTTTTGCACAAGTACTTCTGGCGAGAAGACGAGAACACCATCCTTGTCCTTGAGTTCCTCAGAACCAACTTGGCCACCATCATCGTCGACACTGCTAAGCATTGGATGATTCAAATTCTCTTCGGTCTCGATGCCGCTTGCTGCCACATGGTCCTCCACCGAGATTTGAAGCCCTCTAATCTCTTAATTTCCGAATTCGACCTCCTCAAGATCGCTGATTTTGGACAGTGGATCCATTCATTTCCTATGAATTTGAGGTCTCTTACATCATTGCCTCCCTTCTTGGAGTTCCTCAACAAGTCCTTTTCTCTCTCTCTCTCTCTCTCCATCTGGGTGTGTGTGTATTTGTTTTCAATGAGTTTAAAAGTTATGGAATTTTCATGTGATACAGGTATAGGATTCAGCAAAGGAGGACTTCGTGGCAAGATGGTGTTCTTGGCACAAACTGTCCTATTCCTGCAAAGTGGTACTAGACTTACTAGTTTTAGGTGA

Predicted protein sequences of Glyma05g14680

Limit To All Plant Sequences

>Glyma05g14680.1   sequence type=predicted peptide   gene model=Glyma05g14680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVTSKKTEKVRLSFVLYRNRETNYGSSWWLLVVVGGEEEAWDTKFREDPTGFPDIVVLHKYFWREDENTILVLEFLRTNLATIIVDTAKHWMIQILFGLDAACCHMVLHRDLKPSNLLISEFDLLKIADFGQWIHSFPMNLRSLTSLPPFLEFLNKSFSLSLSLSIWVCVYLFSMSLKVMEFSCDTGIGFSKGGLRGKMVFLAQTVLFLQSGTRLTSFR*

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