Glyma05g14470 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma05g14470

Feature Type:	gene_model
Chromosome:	Gm05
Start:	15595534
stop:	15599101
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g14470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G14170	AT	Annotation by Michelle Graham. TAIR10: SWIB/MDM2 domain superfamily protein \| chr5:4568696-4570444 REVERSE LENGTH=534	SoyBase	E_val: 0	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0006281	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA repair	SoyBase	N/A	ISS
GO:0008284	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation	SoyBase	N/A	ISS
GO:0010224	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-B	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2570	KOG	SWI/SNF transcription activation complex subunit	JGI		ISS
PTHR13844	Panther	BRG-1 ASSOCIATED FACTOR 60 (BAF60)	JGI		ISS
PF02201	PFAM	SWIB/MDM2 domain	JGI		ISS
UniRef100_B9S7A2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Brg-1 associated factor, putative n=1 Tax=Ricinus communis RepID=B9S7A2_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1N798	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N798_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g14470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g14470

Paralog	Evidence	Comments
Glyma19g18360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g14470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g077800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g14470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g14470

Limit To All Plant Sequences

>Glyma05g14470.2   sequence type=CDS   gene model=Glyma05g14470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGTGAACAATAATAACCCTTCTAAGGGCATTGGGGCCTCTTCCTCAACCTTTGGCAATGCTGGAATACCCTCCAATTCTATACCTTCAAACCCTGGTTTTTCACAGTCCCAAGGACAAGCCCAGATTCCTGTTGGTTTTCAAGGGCAGTTTCCACTGTCCCAGGCCCATGCTATTGTCCAAGCTCAGTCCAAGGCCCAGGCCCAGGCCCAGGCCCAAGCAGCAGCTGCGGCCCATGCTCAACTCCAGGCTCATTTGCAAGCTCAGGGGTTGAGTCTTAATCAGAACCAGGCTGGTGGTTTGGGTGTGTCGTCGCCGTCGATTTCCACGCCGGGTAATGCGAGTGGGAAACGGATCCCTATGAAACCCCCCATGCGGCCGGTTGGGTTTTCCCCTCCCAACAGCTTCTCGCCTTTGAGACCGATGGAGCTCACGCCTGCTGCTCGGAGGAAGAAGCAGAAGCTCCCCGAGAAACAGCTGCAAGATAAAGTGGCTGCTATTCTGCCCGAGTCTGCGTTGTATACGCAGCTTCTCGAGTTTGAGTCTCGCGTTGACGCTGCACTTGCTAGAAAGAAGGCTGACATCCAGGAAGCGCTCAAAAACCCGCCATGTATTCAGAAAACTCTTCGTATTTATGTATTTAATACTTTTGCTAATCAAATTCGCACGATTCCGAAGAAGCCAAATGTGGAGCCTCCAACCTGGACGCTAAAGATAGTTGGGAGGATATTGGAGGATGGTGTTGACCCTGATCAGCCAGGAGTAGTTCAGAAGTCGTCTCCTTTGTATCCAAAGTTTTCAGCTTTCTTTAAAAGAGTAACCATTTCTTTGGATCAGAGACTTTATCCCGATAATCACATTATTTTGTGGGAGAATGCTCGATCACCTGCTCCACATGAAGGTTTTGAAGTAAAGAGGAAAGGGGATAAAGAATTTACAGTGAATATACGGCTGGAAATGAATTATGTGCCAGAGAAGTTTAAGCTTTCACCAGCTTTGACAGAAGTTCTTGGTATTGAGGTTGATACCCGCCCGAGAATTGTTGCTGCGATCTGGCACTATGTGAAGGCTAGGAAATTGCAAAACCCAAATGACCCTTCTTACTTTCACTGTGATCCGCCTCTTCAGAAAGTATTTGGAGAAGAAAATATGAAGTTTACAATGGTTTCTCAGAAAATATCATCTCATTTGTTCCCCCCACAGCCTATACTTTTGGAGCATAAGATTAAGCTCTCTGGAAACAGTCCTGCTGGTACTGCTTGTTATGATGTGATGGTTGATGTTCCTTTTCCTATTCAGAGGGAGTTGTCTGCTTTATTGGCTAACGTGGAAAAGAACAAAGATATTGAGACATGTGATGAAGCAATATGTGGAATCATTAGAAAAATCCACGAGCACCGTAGGAGACGGGCATTCTTTCTTGGTTTCAGTCAATCGCCAGTAGAATTTATTAATGCATTGATTGAATCTCAAAGCAGGGATCTGAAACTTGTATCCGGAGAACCTAGTCGCAATGCAGAAAAAGAGCGTCGTTCAGATTTCTTCAACCAACCATGGGTTGAAGATGCTGTTATTCGTTACCTGAATCGCAAACCAGCTGCGGGAAGTGATGCTCCAGGAAGCACATGA

Predicted protein sequences of Glyma05g14470

Limit To All Plant Sequences

>Glyma05g14470.2   sequence type=predicted peptide   gene model=Glyma05g14470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSVNNNNPSKGIGASSSTFGNAGIPSNSIPSNPGFSQSQGQAQIPVGFQGQFPLSQAHAIVQAQSKAQAQAQAQAAAAAHAQLQAHLQAQGLSLNQNQAGGLGVSSPSISTPGNASGKRIPMKPPMRPVGFSPPNSFSPLRPMELTPAARRKKQKLPEKQLQDKVAAILPESALYTQLLEFESRVDAALARKKADIQEALKNPPCIQKTLRIYVFNTFANQIRTIPKKPNVEPPTWTLKIVGRILEDGVDPDQPGVVQKSSPLYPKFSAFFKRVTISLDQRLYPDNHIILWENARSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPALTEVLGIEVDTRPRIVAAIWHYVKARKLQNPNDPSYFHCDPPLQKVFGEENMKFTMVSQKISSHLFPPQPILLEHKIKLSGNSPAGTACYDVMVDVPFPIQRELSALLANVEKNKDIETCDEAICGIIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSRDLKLVSGEPSRNAEKERRSDFFNQPWVEDAVIRYLNRKPAAGSDAPGST*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain