Glyma05g14440 - SoyBase

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Report for Sequence Feature Glyma05g14440

Feature Type:	gene_model
Chromosome:	Gm05
Start:	15530260
stop:	15537129
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g14440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G27120	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr3:10000248-10003265 REVERSE LENGTH=476	SoyBase	E_val: 0	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
KOG0740	KOG	AAA+-type ATPase	JGI		ISS
PTHR23074	Panther	AAA ATPASE	JGI		ISS
PTHR23074:SF17	Panther	FIDGETIN LIKE-1	JGI		ISS
PF00004	PFAM	ATPase family associated with various cellular activities (AAA)	JGI		ISS
PF09336	PFAM	Vps4 C terminal oligomerisation domain	JGI		ISS
UniRef100_B9RBJ1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RBJ1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A0D9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A0D9 related cluster n=1 Tax=unknown RepID=UPI000233A0D9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g14440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g14440

Paralog	Evidence	Comments
Glyma19g18350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g14440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g077900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g14440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g14440

Limit To All Plant Sequences

>Glyma05g14440.3   sequence type=transcript   gene model=Glyma05g14440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTGGTAATTTACTACTCTCCCCGCTGGAGAACCAGGGGGAAATGGCGGGAGATGATGAACACCCTTAATCAAATAGAAAAAACGCATCCAAATAAAAAATATTTCTGCCACCATATTCCATTTTCTTCACGGTGGTTGTTACTTGTTATTGCTGTGCGAAGGTGAAAAAAGGAAGAACAATGGAGGAAGCGAAGGAAAAGTGTTGGAGGATGGAAGTGGAGGAGAAGCTGAAGAGGCTGCAATCTCTTCTCTTCGGCGCAGAGCGCGCTCTCGAGAACAACGACTTCTCCTCGGCTTACATCCTCGCGCTTCGTCTCCTCGGATTCCTCGACGTGAATTCCCACTCCAACGTCGACGAAGCCTTCGTCCAACCGATTCGCCGCGACGCTCTCGCCAAACTCCACTTCGCTCGCCAATCCCTCACTCCTCAATCTGATCGCCAAGCTTTTGAACAAGCAAAGAAATCTCCAGGACGCATTTTTGGCACAACAGGAGATATTGACATTGAGAAGATTCGGAATTCAAAGTACTTCCAAGCTCTTGTCAAGCAATCTAAAGAAAAGGATGAGAATCAATTGGACAAAGCGGGCAGCAAAGCCTCAAAGCAAATGGTGCAAACTAAGTTACCATCCATGTATGGGAAAAGAAGCTTGAGGACTAGCAATGGTTCCAAGAGTATTTTTAACATGAAAAATAATAGCTCTGAGGACTGCATGAGTCTTGATAGGCCTCAATCTCATGCCAGCCATACAAAGGGTCCAGGTTTCTCTTCTATCTTGCAAGTTGAAGGAGAAGAAAGAGCTTTTGGAAACACATTCTCCACAAAACGTGTACACATGGAAAACAATAGCCCCAGAGTTGGATTTGTGAAGTCACCTTCAAGTAAGGAGGATGTTAACCCTGATGCTTGTGGTAACGGGTTTGTTACTGCTAGAGCAAAGCTGGAAATGGAAGCAAAGCAGAAGCGAGGAGTAGGCGGTTCACCCAGTGCCTCTGTCTCACCACAATGTGATAACAATTCTGCCAACAGGCTGTATGGTGGAAGATCATACGGTGTTCCACGACGTGGCGTCCGTGGTAATTTTGTTCCCCCGATTAAATCCAATGGGAACAATGCTGGAAATACAAGCACACGCATTGCTGGAAAATGTGATGATTCTTTAGATGACTCTACAAAGAAATGTCTGGAAATCCTATGTGGTCCTGATGGTGAGCTTCCTGAGAAATTGAGGAATTTGGATCCTCGCCTCATTGAACATGTTAGTAACGAGATTATGGACAGAGATCCCAATGTCCGGTGGGATGATATAGCTGGATTGGAGCATGCCAAGAAATGTGTCAATGAGATGGTCGTATATCCTCTGCAACGTCCTGACATATTCATGGGCTGTCGTTCCCCTGGGAGGGGTCTGCTTCTGTTTGGTCCCCCAGGAACTGGTAAAACAATGATAGGTAAAGCCATAGCAGGGGAGGCGAAGGCAACCTTCTTTTACATATCCGCAAGTTCTTTGACTAGCAAGTGGATTGGTGAAGGTGAAAAGCTTGTAAGAGCCCTTTTTGGAGTTGCCAGTTGTCGTCAGCCAGCAGTAATTTTTGTTGATGAAATAGATTCGCTCCTGTCTCAGCGTAAATCAGACGGTGAGCATGAATCAAGTAGACGGCTAAAGACACAGTTTCTCATTGAAATGGAAGGCTTTGACAGTGGTAGCGAGCAAATTTTGCTTATAGGGGCAACAAATCGTCCCCAAGAGCTTGATGAAGCAGCACGAAGGAGACTTACTAAACGACTTTATATTCCCCTACCTTGCTCAGAGGCAAGAGCTTGGATTATACGTAACCTTCTAGAGAAAGATGGATTATTCAAGCTATCATGCGACGAAATGGATATCATATGCAAATTTACGGAAGGTTATTCAGGATCAGACATGAAAAACTTAGTGAAGGATGCTTCTATGGGACCCCTAAGAGAGGCTTTAAGTCAAGGTATAGAAATTACAAAGTTGAAAAAGGAGGATATGCGACCTGTAACTCTTCAGGATTTCAAGAATTCCCTCCAAGAGGTGAGGCCTTCTGTTTCCACAAATGAACTTGGCACTTATGAACAATGGAACAAGCAATTTGGAAGCCTATCACTGTAGTGGCATGTGTTATAACTGAATGGAGACTAAGCATATCAACAGCTAGTCACAGAGATGGTAGCTACTAGCAATTACATCAGTCAGATAGAGCTGTACCTTAATACCTGCAGTATGGTAATCTTTATGTTTAAATCAACTCTCATCGCGCCTTGCATAACCCATTAGATATAAAATTCAATTGGTGCAAGTTGAATATGATGACGATGTTTTTAAGAATTTAGGTCTCAAGCACACAGCATGTTTTACAGGCAGCATTTTCTGTGATGTTGATTATGAACATGTTCAATTATCAGGATTAGCTATAGCTAAAACATCTGCAGAACTTCATTGTATTGTTTGTCTGAGCATTTGTTGTTTCTTTTGCTTAATTAAGACACTGAAATGTACTAAATACTAATTCTTGTAGCTTGGTTTCCA

Coding sequences of Glyma05g14440

Limit To All Plant Sequences

>Glyma05g14440.2   sequence type=CDS   gene model=Glyma05g14440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAGCGAAGGAAAAGTGTTGGAGGATGGAAGTGGAGGAGAAGCTGAAGAGGCTGCAATCTCTTCTCTTCGGCGCAGAGCGCGCTCTCGAGAACAACGACTTCTCCTCGGCTTACATCCTCGCGCTTCGTCTCCTCGGATTCCTCGACGTGAATTCCCACTCCAACGTCGACGAAGCCTTCGTCCAACCGATTCGCCGCGACGCTCTCGCCAAACTCCACTTCGCTCGCCAATCCCTCACTCCTCAATCTGATCGCCAAGCTTTTGAACAAGCAAAGAAATCTCCAGGACGCATTTTTGGCACAACAGGAGATATTGACATTGAGAAGATTCGGAATTCAAAGTACTTCCAAGCTCTTGTCAAGCAATCTAAAGAAAAGGATGAGAATCAATTGGTTGATCACCTGGGGAAACAGGACAAAGCGGGCAGCAAAGCCTCAAAGCAAATGGTGCAAACTAAGTTACCATCCATGTATGGGAAAAGAAGCTTGAGGACTAGCAATGGTTCCAAGAGTATTTTTAACATGAAAAATAATAGCTCTGAGGACTGCATGAGTCTTGATAGGCCTCAATCTCATGCCAGCCATACAAAGGGTCCAGGTTTCTCTTCTATCTTGCAAGTTGAAGGAGAAGAAAGAGCTTTTGGAAACACATTCTCCACAAAACGTGTACACATGGAAAACAATAGCCCCAGAGTTGGATTTGTGAAGTCACCTTCAAGTAAGGAGGATGTTAACCCTGATGCTTGTGGTAACGGGTTTGTTACTGCTAGAGCAAAGCTGGAAATGGAAGCAAAGCAGAAGCGAGGAGTAGGCGGTTCACCCAGTGCCTCTGTCTCACCACAATGTGATAACAATTCTGCCAACAGGCTGTATGGTGGAAGATCATACGGTGTTCCACGACGTGGCGTCCGTGGTAATTTTGTTCCCCCGATTAAATCCAATGGGAACAATGCTGGAAATACAAGCACACGCATTGCTGGAAAATGTGATGATTCTTTAGATGACTCTACAAAGAAATGTCTGGAAATCCTATGTGGTCCTGATGGTGAGCTTCCTGAGAAATTGAGGAATTTGGATCCTCGCCTCATTGAACATGTTAGTAACGAGATTATGGACAGAGATCCCAATGTCCGGTGGGATGATATAGCTGGATTGGAGCATGCCAAGAAATGTGTCAATGAGATGGTCGTATATCCTCTGCAACGTCCTGACATATTCATGGGCTGTCGTTCCCCTGGGAGGGGTCTGCTTCTGTTTGGTCCCCCAGGAACTGGTAAAACAATGATAGGTAAAGCCATAGCAGGGGAGGCGAAGGCAACCTTCTTTTACATATCCGCAAGTTCTTTGACTAGCAAGTGGATTGGTGAAGGTGAAAAGCTTGTAAGAGCCCTTTTTGGAGTTGCCAGTTGTCGTCAGCCAGCAGTAATTTTTGTTGATGAAATAGATTCGCTCCTGTCTCAGCGTAAATCAGACGGTGAGCATGAATCAAGTAGACGGCTAAAGACACAGTTTCTCATTGAAATGGAAGGCTTTGACAGTGGTAGCGAGCAAATTTTGCTTATAGGGGCAACAAATCGTCCCCAAGAGCTTGATGAAGCAGCACGAAGGAGACTTACTAAACGACTTTATATTCCCCTACCTTGCTCAGAGGCAAGAGCTTGGATTATACGTAACCTTCTAGAGAAAGATGGATTATTCAAGCTATCATGCGACGAAATGGATATCATATGCAAATTTACGGAAGGTTATTCAGGATCAGACATGAAAAACTTAGTGAAGGATGCTTCTATGGGACCCCTAAGAGAGGCTTTAAGTCAAGGTATAGAAATTACAAAGTTGAAAAAGGAGGATATGCGACCTGTAACTCTTCAGGATTTCAAGAATTCCCTCCAAGAGGTGAGGCCTTCTGTTTCCACAAATGAACTTGGCACTTATGAACAATGGAACAAGCAATTTGGAAGCCTATCACTGTAG

>Glyma05g14440.3   sequence type=CDS   gene model=Glyma05g14440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAGCGAAGGAAAAGTGTTGGAGGATGGAAGTGGAGGAGAAGCTGAAGAGGCTGCAATCTCTTCTCTTCGGCGCAGAGCGCGCTCTCGAGAACAACGACTTCTCCTCGGCTTACATCCTCGCGCTTCGTCTCCTCGGATTCCTCGACGTGAATTCCCACTCCAACGTCGACGAAGCCTTCGTCCAACCGATTCGCCGCGACGCTCTCGCCAAACTCCACTTCGCTCGCCAATCCCTCACTCCTCAATCTGATCGCCAAGCTTTTGAACAAGCAAAGAAATCTCCAGGACGCATTTTTGGCACAACAGGAGATATTGACATTGAGAAGATTCGGAATTCAAAGTACTTCCAAGCTCTTGTCAAGCAATCTAAAGAAAAGGATGAGAATCAATTGGACAAAGCGGGCAGCAAAGCCTCAAAGCAAATGGTGCAAACTAAGTTACCATCCATGTATGGGAAAAGAAGCTTGAGGACTAGCAATGGTTCCAAGAGTATTTTTAACATGAAAAATAATAGCTCTGAGGACTGCATGAGTCTTGATAGGCCTCAATCTCATGCCAGCCATACAAAGGGTCCAGGTTTCTCTTCTATCTTGCAAGTTGAAGGAGAAGAAAGAGCTTTTGGAAACACATTCTCCACAAAACGTGTACACATGGAAAACAATAGCCCCAGAGTTGGATTTGTGAAGTCACCTTCAAGTAAGGAGGATGTTAACCCTGATGCTTGTGGTAACGGGTTTGTTACTGCTAGAGCAAAGCTGGAAATGGAAGCAAAGCAGAAGCGAGGAGTAGGCGGTTCACCCAGTGCCTCTGTCTCACCACAATGTGATAACAATTCTGCCAACAGGCTGTATGGTGGAAGATCATACGGTGTTCCACGACGTGGCGTCCGTGGTAATTTTGTTCCCCCGATTAAATCCAATGGGAACAATGCTGGAAATACAAGCACACGCATTGCTGGAAAATGTGATGATTCTTTAGATGACTCTACAAAGAAATGTCTGGAAATCCTATGTGGTCCTGATGGTGAGCTTCCTGAGAAATTGAGGAATTTGGATCCTCGCCTCATTGAACATGTTAGTAACGAGATTATGGACAGAGATCCCAATGTCCGGTGGGATGATATAGCTGGATTGGAGCATGCCAAGAAATGTGTCAATGAGATGGTCGTATATCCTCTGCAACGTCCTGACATATTCATGGGCTGTCGTTCCCCTGGGAGGGGTCTGCTTCTGTTTGGTCCCCCAGGAACTGGTAAAACAATGATAGGTAAAGCCATAGCAGGGGAGGCGAAGGCAACCTTCTTTTACATATCCGCAAGTTCTTTGACTAGCAAGTGGATTGGTGAAGGTGAAAAGCTTGTAAGAGCCCTTTTTGGAGTTGCCAGTTGTCGTCAGCCAGCAGTAATTTTTGTTGATGAAATAGATTCGCTCCTGTCTCAGCGTAAATCAGACGGTGAGCATGAATCAAGTAGACGGCTAAAGACACAGTTTCTCATTGAAATGGAAGGCTTTGACAGTGGTAGCGAGCAAATTTTGCTTATAGGGGCAACAAATCGTCCCCAAGAGCTTGATGAAGCAGCACGAAGGAGACTTACTAAACGACTTTATATTCCCCTACCTTGCTCAGAGGCAAGAGCTTGGATTATACGTAACCTTCTAGAGAAAGATGGATTATTCAAGCTATCATGCGACGAAATGGATATCATATGCAAATTTACGGAAGGTTATTCAGGATCAGACATGAAAAACTTAGTGAAGGATGCTTCTATGGGACCCCTAAGAGAGGCTTTAAGTCAAGGTATAGAAATTACAAAGTTGAAAAAGGAGGATATGCGACCTGTAACTCTTCAGGATTTCAAGAATTCCCTCCAAGAGGTGAGGCCTTCTGTTTCCACAAATGAACTTGGCACTTATGAACAATGGAACAAGCAATTTGGAAGCCTATCACTGTAG

Predicted protein sequences of Glyma05g14440

Limit To All Plant Sequences

>Glyma05g14440.2   sequence type=predicted peptide   gene model=Glyma05g14440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEAKEKCWRMEVEEKLKRLQSLLFGAERALENNDFSSAYILALRLLGFLDVNSHSNVDEAFVQPIRRDALAKLHFARQSLTPQSDRQAFEQAKKSPGRIFGTTGDIDIEKIRNSKYFQALVKQSKEKDENQLVDHLGKQDKAGSKASKQMVQTKLPSMYGKRSLRTSNGSKSIFNMKNNSSEDCMSLDRPQSHASHTKGPGFSSILQVEGEERAFGNTFSTKRVHMENNSPRVGFVKSPSSKEDVNPDACGNGFVTARAKLEMEAKQKRGVGGSPSASVSPQCDNNSANRLYGGRSYGVPRRGVRGNFVPPIKSNGNNAGNTSTRIAGKCDDSLDDSTKKCLEILCGPDGELPEKLRNLDPRLIEHVSNEIMDRDPNVRWDDIAGLEHAKKCVNEMVVYPLQRPDIFMGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPCSEARAWIIRNLLEKDGLFKLSCDEMDIICKFTEGYSGSDMKNLVKDASMGPLREALSQGIEITKLKKEDMRPVTLQDFKNSLQEVRPSVSTNELGTYEQWNKQFGSLSL*

>Glyma05g14440.3   sequence type=predicted peptide   gene model=Glyma05g14440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEAKEKCWRMEVEEKLKRLQSLLFGAERALENNDFSSAYILALRLLGFLDVNSHSNVDEAFVQPIRRDALAKLHFARQSLTPQSDRQAFEQAKKSPGRIFGTTGDIDIEKIRNSKYFQALVKQSKEKDENQLDKAGSKASKQMVQTKLPSMYGKRSLRTSNGSKSIFNMKNNSSEDCMSLDRPQSHASHTKGPGFSSILQVEGEERAFGNTFSTKRVHMENNSPRVGFVKSPSSKEDVNPDACGNGFVTARAKLEMEAKQKRGVGGSPSASVSPQCDNNSANRLYGGRSYGVPRRGVRGNFVPPIKSNGNNAGNTSTRIAGKCDDSLDDSTKKCLEILCGPDGELPEKLRNLDPRLIEHVSNEIMDRDPNVRWDDIAGLEHAKKCVNEMVVYPLQRPDIFMGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPCSEARAWIIRNLLEKDGLFKLSCDEMDIICKFTEGYSGSDMKNLVKDASMGPLREALSQGIEITKLKKEDMRPVTLQDFKNSLQEVRPSVSTNELGTYEQWNKQFGSLSL*

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