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Report for Sequence Feature Glyma05g14330

Feature Type:gene_model
Chromosome:Gm05
Start:15221451
stop:15227947
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G27020AT Annotation by Michelle Graham. TAIR10: 20S proteasome alpha subunit G1 | chr2:11528515-11530858 REVERSE LENGTH=249 SoyBaseE_val: 3.00E-152ISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0006972GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic response SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009853GO-bp Annotation by Michelle Graham. GO Biological Process: photorespiration SoyBaseN/AISS
GO:0043161GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0043248GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome assembly SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0051603GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis involved in cellular protein catabolic process SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0080129GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly SoyBaseN/AISS
GO:0000502GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005839GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proteasome core complex SoyBaseN/AISS
GO:0019773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proteasome core complex, alpha-subunit complex SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0004175GO-mf Annotation by Michelle Graham. GO Molecular Function: endopeptidase activity SoyBaseN/AISS
GO:0004298GO-mf Annotation by Michelle Graham. GO Molecular Function: threonine-type endopeptidase activity SoyBaseN/AISS
GO:0008233GO-mf Annotation by Michelle Graham. GO Molecular Function: peptidase activity SoyBaseN/AISS
KOG0184 KOG 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 JGI ISS
PTHR11599Panther PROTEASOME SUBUNIT ALPHA/BETA JGI ISS
PTHR11599:SF10Panther PROTEASOME BETA/DELTA SUBUNIT JGI ISS
PF00227PFAM Proteasome subunit JGI ISS
PF10584PFAM Proteasome subunit A N-terminal signature JGI ISS
UniRef100_I1K1X5UniRef Annotation by Michelle Graham. Best UniRef hit: Proteasome subunit alpha type n=1 Tax=Glycine max RepID=I1K1X5_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1K1X5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Proteasome subunit alpha type n=1 Tax=Glycine max RepID=I1K1X5_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g14330 not represented in the dataset

Glyma05g14330 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g079000 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma05g14330.2   sequence type=transcript   gene model=Glyma05g14330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGATCTGTACAATTTACTAACTTTTTAGTCACGCAGTTAAACTCTTGAGCAAGCAAAGATCCCCTTTATATTCTTCATTCCTCTGGGGTGCTGCACAACGAAACTCACAGAAGAAAGAAGAAAAAGAAGCGAAACTAAAGTCAGCATTCGAAAAAGATGAGTAGCATCGGTACAGGTTACGATCTATCGGTCACCACTTTCTCCCCTGATGGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAGCGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAGTTATGTGCACCTCTGTACGCTATATTGGTGGCTCAGACCTTTTGGATGTGGTGTCATACTAGGAGGTTATGACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTATTGAAGTGGCTAAAATTATATATGGAGTTCATGATGAGGCAAAGGACAAAGATTTTGAGCTAGAAATGAGCTGGGTGTGTGATGAGTCAAACCGCCAACATGAGAAGGTCCCGGATGAGCTTCTAGAAGAAGCAAAGGCAGCTGCCAAAGCAGCTCTTGAAGAAATGGATGCAGATTAATAGACTAGAAATGTTTATTTCAAAGTTGCATTTCATAACTTGTAATTGAGCATTTGGAACATCTATAGGAAATACAAGGCTTCGATAGTCGGATTTTGTATGCTTCTTGATGAATTAATGCCCTTGTTGATTTCCTGTTACTGGGAGAATTGTTTTGAAGTTCTTTAGATTCTGACCTTTATTGATTTGTGTTGAATTCTCTGTCAAATCCTTTATGCTAATGTGCACATCATTGAGTTTCCTTTATTTTACTCGTCATTTGTGCGCATTCCTTTTTGCTTGCATAGGATTTGAACCATCAAATATTCAGGAACACTTTCAACATTATTACATAAATT

>Glyma05g14330.1   sequence type=CDS   gene model=Glyma05g14330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTAGCATCGGTACAGGTTACGATCTATCGGTCACCACTTTCTCCCCTGATGGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAGCGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAGTTATGTGCACCTCTGTACGCTATATTGGTGGCTCAGACCTTTTGGATGTGGTGTCATACTAGGAGGTTATGACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTATTGAAGTGGCTAAAATTATATATGGAGTTCATGATGAGGCAAAGGACAAAGATTTTGAGCTAGAAATGAGCTGGGTGTGTGATGAGTCAAACCGCCAACATGAGAAGGTAAGGCTGGGGTGTGCTTTTGGTGACAATGATCAATGTGCTTCATTTGTGATTGGTTGTAATTTTATCATTTATTTCTTTTGCTTCCTGGCTGAGAGCATAAAATAA

>Glyma05g14330.2   sequence type=CDS   gene model=Glyma05g14330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTAGCATCGGTACAGGTTACGATCTATCGGTCACCACTTTCTCCCCTGATGGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAGCGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAGTTATGTGCACCTCTGTACGCTATATTGGTGGCTCAGACCTTTTGGATGTGGTGTCATACTAGGAGGTTATGACAGGGATGGACCACAGTTGTACATGGTTGAACCTTCCGGTGTTTCCTATAGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTATTGAAGTGGCTAAAATTATATATGGAGTTCATGATGAGGCAAAGGACAAAGATTTTGAGCTAGAAATGAGCTGGGTGTGTGATGAGTCAAACCGCCAACATGAGAAGGTCCCGGATGAGCTTCTAGAAGAAGCAAAGGCAGCTGCCAAAGCAGCTCTTGAAGAAATGGATGCAGATTAA

>Glyma05g14330.1   sequence type=predicted peptide   gene model=Glyma05g14330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGVVLGVEKLIPSKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVARAKSEATNYDSVYGEPIPVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMVEPSGVSYRYFGAAIGKGRQAAKTEIEKLKLADMTCRQGVIEVAKIIYGVHDEAKDKDFELEMSWVCDESNRQHEKVRLGCAFGDNDQCASFVIGCNFIIYFFCFLAESIK*

>Glyma05g14330.2   sequence type=predicted peptide   gene model=Glyma05g14330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGVVLGVEKLIPSKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVARAKSEATNYDSVYGEPIPVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMVEPSGVSYRYFGAAIGKGRQAAKTEIEKLKLADMTCRQGVIEVAKIIYGVHDEAKDKDFELEMSWVCDESNRQHEKVPDELLEEAKAAAKAALEEMDAD*







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