SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G27390 | AT | Annotation by Michelle Graham. TAIR10: translocase outer membrane 20-2 | chr1:9513469-9514912 REVERSE LENGTH=210 | SoyBase | E_val: 2.00E-81 | ISS |
| GO:0006626 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion | SoyBase | N/A | ISS |
| GO:0045040 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into mitochondrial outer membrane | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005741 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial outer membrane | SoyBase | N/A | ISS |
| GO:0005742 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial outer membrane translocase complex | SoyBase | N/A | ISS |
| GO:0005743 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane | SoyBase | N/A | ISS |
| GO:0005744 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane presequence translocase complex | SoyBase | N/A | ISS |
| GO:0022626 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome | SoyBase | N/A | ISS |
| GO:0015450 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| PTHR10790 | Panther | UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT-RELATED | JGI | ISS | |
| PTHR10790:SF9 | Panther | SMALL GLUTAMINE-RICH TETRATRICOPEPTIDE REPEAT (TPR) CONTAINING PROTEIN | JGI | ISS | |
| PF06552 | PFAM | Plant specific mitochondrial import receptor subunit TOM20 | JGI | ISS | |
| UniRef100_B9RBI0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial import receptor subunit TOM20, putative n=1 Tax=Ricinus communis RepID=B9RBI0_RICCO | SoyBase | E_val: 5.00E-98 | ISS |
| UniRef100_C6TMM7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TMM7_SOYBN | SoyBase | E_val: 1.00E-152 | ISS |
|
Glyma05g14300 not represented in the dataset |
Glyma05g14300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g079100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g14300.3 sequence type=transcript gene model=Glyma05g14300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACAGACGGAAATTTCTCTTTTTCTTTTCCGACCACGTCTCTCCACGTAGGTCTGTACTAGTCACACTATCCTCTTTCATAAGAGGAAGTGCAGAGATTCATTGACTTTCAAAAACCCAAAACCCTAAAAAGCGCAAGAAAACAAAATCCCCAAAATATCTCTCGCTCTGAAACCGCCATGGATTTGCAGCAGAGCGAGTTCGATCGCCTCCTGTTCTTCGAGCACGCTCGTAAGGCCGCAGAAGCCGAATACGAGAAGAACCCTCTCGACGCTGATAACTTAACAAGATGGGGTGGAGCTTTATTAGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGAGGCTGTTTCAAAGCTAGAGGAGGCGCTTGCGGTGAATCCCAAGAAGCATGACACTCTTTGGTGCCTGGGAAATGCTCACACTTCACAAGCATTTTTAATTCCAGACCAGGACGAGGCCAAGGTTTATTTTGATAAGGCAGCTGAGTACTTTCAGCAAGCTGTTGATGAGGATCCTTCGAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAGGCTCCTGAGCTGCATGTAGAAATCCATAAGCATGGATTTGGTCAGCAGCAGCAGCAGCAGGCAGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGACAAATGTAATACTTAAAAGATTTTGTTGCCTGTCTTTACCCTGTGATTATTCTGTATCAGGCTTTTGTAGCTAATTTGTTTGTATATTTTTCTCATGATTTTTCTGAGATTTAATAATTTTAAATTTAAAATTTCTTCCATATATGCAATGTTCTCTGACTGAGGACACATTCAAGGAGTGTTGATGCAGTGAGAAATAAAGGAGTTTGTTGACTGGAATGTATGGTGTCATTTCGTTGACAATTAATGGTCTTAAATGTTAATTTTTGTATGATAATTTTGTTTTTTTGTAGTGAGTAGGAACTAGGTGACTAAGGTATGCGGGGCACAAATTTTATAGGATGGGCTCATACTTTCTATCATCACAGCACTTAATTGACTTTGTATGCATCTTAATTATCTAAGTGTATACAGGCTGAGATAGATTGGATTAATGTCGGTGGATTTTTTCTTTGAAGAGAATACTATATGTATTTTATTTTTTTGATAAAAAAATAGAGAACTAATCTTTCAACTGGTCTTGATATAAGTGCTATTTGTATATTTTGGGTTAGACTTGGCTCTTGCACTGCTAGTTATTTATATCTGTATTTTGGTTAAGCACGCCTTGTGCTACAAAAATCGCATTGAAGGCAGATAGCGTCTGATCTTCGTATTTGAGTTGTGTTCATTTATCACCTAATTTGTTTGGTTATTTTTCAGACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGGATAATTCTGGCAGTCGGCATTGTTGCATGGGTGGGATTTGCAAAATCGAACCTGCCACCACCTCCCCCTCCACCTCCTCGATAAGTGGAGCCATTTGATTTTATCTCATACATTATTGATTATTGAGAATGATATTTGATTTCGGGCAGTGCCGTTTATTTAGTTTTTTTTGACAGTAGTAATGGTTGTCATGGGGCTTATCTTATCCATCATGCGAAATTTTATCTTACCGTGGGTTGAGCAGTTAAAATGTCCGGCTTAGATCTTTGCTAGTATTTGCAAAATCGAAATCATTGCCATTTGCCATCAGGCAAGTATTGAATATAATAAGAATTTTGCTGCAAGGTTTCGGTTTTTCATTGATGGCTCAACTTAATTGAGCTCTTTTTTGGAGGACAGTTGCTGGGTGGTTGCATAGAAGCATTGTAAGTAGTTGCATTAAGTCATTGGTATTAGACACCGTTGCTAGGATGAATTAGTGACTGTTTGGTGAATATTCAA >Glyma05g14300.4 sequence type=transcript gene model=Glyma05g14300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACAGACGGAAATTTCTCTTTTTCTTTTCCGACCACGTCTCTCCACGTAGGTCTGTACTAGTCACACTATCCTCTTTCATAAGAGGAAGTGCAGAGATTCATTGACTTTCAAAAACCCAAAACCCTAAAAAGCGCAAGAAAACAAAATCCCCAAAATATCTCTCGCTCTGAAACCGCCATGGATTTGCAGCAGAGCGAGTTCGATCGCCTCCTGTTCTTCGAGCACGCTCGTAAGGCCGCAGAAGCCGAATACGAGAAGAACCCTCTCGACGCTGATAACTTAACAAGATGGGGTGGAGCTTTATTAGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGAGGCTGTTTCAAAGCTAGAGGAGGCGCTTGCGGTGAATCCCAAGAAGCATGACACTCTTTGGTGCCTGGGAAATGCTCACACTTCACAAGCATTTTTAATTCCAGACCAGGACGAGGCCAAGGTTTATTTTGATAAGGCAGCTGAGTACTTTCAGCAAGCTGTTGATGAGGATCCTTCGAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAGGTATGTTCTGTATTGTAGTGTATTAGTTTTGTACCATTATCATATTGCCTAAATTACTCATTTGTCATCTACTTTGTTTTTGGAAGCTGCAATGGAATATAGAAATGGGTGTTACAATTTGTTCAGTTTTGTTGTCATTGGTTTTTTCATCTGTTTCATGTCTTGATTGACAAAACTAAGTGAGATATATGGATTTTAAATGCTTTTACAACACTGAGTAAGGAGCCCTGCAAATACGGTGTGGTAATTTGTAAAATGGTTCTGATATCTGTGTTTATGCATGAAAGTATGAGACTGCCTTGACTTGTTGATTGTGAATAAATCCATGTTGACCAGATTTGCATGAATCTTGATGCTATTCATGTGATTTGATCCCAATTCAGAAAGCTGCCATTATAGATCACACAATTGTTTTGGGA
>Glyma05g14300.1 sequence type=CDS gene model=Glyma05g14300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTTGCAGCAGAGCGAGTTCGATCGCCTCCTGTTCTTCGAGCACGCTCGTAAGGCCGCAGAAGCCGAATACGAGAAGAACCCTCTCGACGCTGATAACTTAACAAGATGGGGTGGAGCTTTATTAGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGAGGCTGTTTCAAAGCTAGAGGAGGCGCTTGCGGTGAATCCCAAGAAGCATGACACTCTTTGGTGCCTGGGAAATGCTCACACTTCACAAGCATTTTTAATTCCAGACCAGGACGAGGCCAAGGTTTATTTTGATAAGGCAGCTGAGTACTTTCAGCAAGCTGTTGATGAGGATCCTTCGAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAGGCTCCTGAGCTGCATGTAGAAATCCATAAGCATGGATTTGGTCAGCAGCAGCAGCAGCAGGCAGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGACAAATACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGGATAATTCTGGCAGTCGGCATTGTTGCATGGGTGGGATTTGCAAAATCGAACCTGCCACCACCTCCCCCTCCACCTCCTCGATAA >Glyma05g14300.3 sequence type=CDS gene model=Glyma05g14300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTTGCAGCAGAGCGAGTTCGATCGCCTCCTGTTCTTCGAGCACGCTCGTAAGGCCGCAGAAGCCGAATACGAGAAGAACCCTCTCGACGCTGATAACTTAACAAGATGGGGTGGAGCTTTATTAGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGAGGCTGTTTCAAAGCTAGAGGAGGCGCTTGCGGTGAATCCCAAGAAGCATGACACTCTTTGGTGCCTGGGAAATGCTCACACTTCACAAGCATTTTTAATTCCAGACCAGGACGAGGCCAAGGTTTATTTTGATAAGGCAGCTGAGTACTTTCAGCAAGCTGTTGATGAGGATCCTTCGAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAGGCTCCTGAGCTGCATGTAGAAATCCATAAGCATGGATTTGGTCAGCAGCAGCAGCAGCAGGCAGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGACAAATGTAATACTTAAAAGATTTTGTTGCCTGTCTTTACCCTGTGATTATTCTGTATCAGGCTTTTGTAGCTAA >Glyma05g14300.4 sequence type=CDS gene model=Glyma05g14300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTTGCAGCAGAGCGAGTTCGATCGCCTCCTGTTCTTCGAGCACGCTCGTAAGGCCGCAGAAGCCGAATACGAGAAGAACCCTCTCGACGCTGATAACTTAACAAGATGGGGTGGAGCTTTATTAGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGAGGCTGTTTCAAAGCTAGAGGAGGCGCTTGCGGTGAATCCCAAGAAGCATGACACTCTTTGGTGCCTGGGAAATGCTCACACTTCACAAGCATTTTTAATTCCAGACCAGGACGAGGCCAAGGTTTATTTTGATAAGGCAGCTGAGTACTTTCAGCAAGCTGTTGATGAGGATCCTTCGAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAGGTATGTTCTGTATTGTAG
>Glyma05g14300.1 sequence type=predicted peptide gene model=Glyma05g14300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDLQQSEFDRLLFFEHARKAAEAEYEKNPLDADNLTRWGGALLELSQFQSFPESKKMTQEAVSKLEEALAVNPKKHDTLWCLGNAHTSQAFLIPDQDEAKVYFDKAAEYFQQAVDEDPSNELYRKSLEVAAKAPELHVEIHKHGFGQQQQQQAAATAGSSTSASTNTQKKKKSSDLKYDIFGWIILAVGIVAWVGFAKSNLPPPPPPPPR* >Glyma05g14300.3 sequence type=predicted peptide gene model=Glyma05g14300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDLQQSEFDRLLFFEHARKAAEAEYEKNPLDADNLTRWGGALLELSQFQSFPESKKMTQEAVSKLEEALAVNPKKHDTLWCLGNAHTSQAFLIPDQDEAKVYFDKAAEYFQQAVDEDPSNELYRKSLEVAAKAPELHVEIHKHGFGQQQQQQAAATAGSSTSASTNVILKRFCCLSLPCDYSVSGFCS* >Glyma05g14300.4 sequence type=predicted peptide gene model=Glyma05g14300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDLQQSEFDRLLFFEHARKAAEAEYEKNPLDADNLTRWGGALLELSQFQSFPESKKMTQEAVSKLEEALAVNPKKHDTLWCLGNAHTSQAFLIPDQDEAKVYFDKAAEYFQQAVDEDPSNELYRKSLEVAAKVCSVL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
