Glyma05g13910 - SoyBase

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Report for Sequence Feature Glyma05g13910

Feature Type:	gene_model
Chromosome:	Gm05
Start:	14669529
stop:	14671678
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g13910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G52990	AT	Annotation by Michelle Graham. TAIR10: Pyruvate kinase family protein \| chr3:19649336-19652237 FORWARD LENGTH=474	SoyBase	E_val: 2.00E-89	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyruvate kinase activity	SoyBase	N/A	ISS
GO:0030955	GO-mf	Annotation by Michelle Graham. GO Molecular Function: potassium ion binding	SoyBase	N/A	ISS
PTHR11817	Panther	PYRUVATE KINASE	JGI		ISS
PF00224	PFAM	Pyruvate kinase, barrel domain	JGI		ISS
UniRef100_I1K1W5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pyruvate kinase (Fragment) n=1 Tax=Glycine max RepID=I1K1W5_SOYBN	SoyBase	E_val: 5.00E-149	ISS
UniRef100_I1K1W5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Pyruvate kinase (Fragment) n=1 Tax=Glycine max RepID=I1K1W5_SOYBN	SoyBase	E_val: 5.00E-149	ISS

Expression Patterns of Glyma05g13910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g13910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma05g13910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g13910

Limit To All Plant Sequences

>Glyma05g13910.1   sequence type=CDS   gene model=Glyma05g13910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTTCTAATAGAACGGATTCTTGTTTATCAGAAAAAATTATGCAGGCTGTGAAGAAGGGTGATACTATTTTTATCGGAAAATACCTATTTACTAGAAGTGAAACAGCTTCCGTATGGCTAGAGGTCAGTGAGGAGAAAGGTGAGGATGTCACCTGTCTGGTAAAAATGACTGCTACATTGTCTGGATCATTGTTTACTGTACATGTAATAAGCACATGGGGTGTTCGAAACAATATTGACTTCCTTTCATTATATACCCGACACGTTGAAGATATTCGTCATGCGCGTGAATTTCTTTCTAAATTGGGTGACCGTAAGCAGACACATATTTATGCAAAGATTGAAAATACAGAGGGACTGCAGCATTTTGATGAAATATTGAGAGAAGCAGATAGCATCATCCTCGCTCGTGGAAATTTAGGGATAGAACTCCCATCTGAGAAGCATGAAGGAAGAATTATGTCTATTTTCTTATTCCAAAAGGCTGCTATTTACAAGTGTAACATGGTTGGAAAGCCAGTTGTTGTTACACGTGTTGTAGACTCTATGACTGATAATCTAAGACCTACTCGTGCTGAAGCAACAGATGTTGCCAAGCAGTGTTGGATG

Predicted protein sequences of Glyma05g13910

Limit To All Plant Sequences

>Glyma05g13910.1   sequence type=predicted peptide   gene model=Glyma05g13910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CSNRTDSCLSEKIMQAVKKGDTIFIGKYLFTRSETASVWLEVSEEKGEDVTCLVKMTATLSGSLFTVHVISTWGVRNNIDFLSLYTRHVEDIRHAREFLSKLGDRKQTHIYAKIENTEGLQHFDEILREADSIILARGNLGIELPSEKHEGRIMSIFLFQKAAIYKCNMVGKPVVVTRVVDSMTDNLRPTRAEATDVAKQCWM

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