SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G56840 | AT | Annotation by Michelle Graham. TAIR10: FAD-dependent oxidoreductase family protein | chr3:21044317-21046177 FORWARD LENGTH=483 | SoyBase | E_val: 0 | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG2665 | KOG | Predicted FAD-dependent oxidoreductase | JGI | ISS | |
| PTHR13847 | Panther | FAD NAD BINDING OXIDOREDUCTASES | JGI | ISS | |
| PTHR13847:SF22 | Panther | gb def: sarcosine oxidase, soxb [halobacterium sp. nrc-1] | JGI | ISS | |
| PF01266 | PFAM | FAD dependent oxidoreductase | JGI | ISS | |
| UniRef100_G7KP59 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: L-2-hydroxyglutarate dehydrogenase n=1 Tax=Medicago truncatula RepID=G7KP59_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K1W2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K1W2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g13880 not represented in the dataset |
Glyma05g13880 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g079900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g13880.1 sequence type=CDS gene model=Glyma05g13880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGAAGCAAACAATTCAAAGGTGGGAAAGATGCATATCAGCATCAAGAAGAAGGGGTGATGGTCATACGAAACGGAAGAAGCACTTATTTGGCAAATGGGTCAGGAGCATGAGCAGCAGCACCATTCAAAGTAATGATAATAGGACAACCTGGGACAGTGTTCCAAAGGAGAGAGTGGAGTGTGTGGTGATAGGGGCTGGTGTGGTTGGCATCGCAGTGGCAAGAGCCCTAGCACTCAAGGGCAGGGAAGTGTTGGTCGTGGAATCAGCCCCCACCTTTGGAACAGGAACCAGTTCTCGAAACAGTGAGGTTATTCATGCTGGAATCTATTACCCTCTCAACTCTTTCAAGGCAATATTTTGTGTAAGGGGAAGAGAAATGTTATATGAGTATTGCTCCAAGCATGATATTCCACATAAACAAATTGGTAAGCTTATAGTGGCTACTCGATCTTCTGAGATTCCAAAGCTAAATGATATTTTAAATTGTGGGATTCAAAATGGGGTTGATGGTTTGAAGATTGTGGATGGTGTTGAGGCCATGAAAATGGAGCCTGAATTGCAATGCGTGAAAGCTATACTATCACCTCTCACTGGGATTGTTGATTCCCATTCTTTAATGCTTTCTTTAGTGGGGGAAGCTGAAAATCAAGGAACAACCTTCACATACAATTCGACAGTCATTGGTGGCCATCTTGAAGGAAGTGAGATTTGTCTTCATGTGACAGAAACTGACCGTCTTACAGAATGGAAAGGGACATCAATTTTGCAACCAGAACTACTACTAATTCCTAAACTTGTTGTGAACTCTACAGGCTTAAGTTCCCCTGTCCTTGCAAAGAGATTTAATGGCCCAAAAAGTGGAGTTGTTCCTCCTGCTTACTATGCACGTGGTTGCTACTTCACGTTATCTAATACTAAAAACTCTCCTTTCAGACGTTTGATATATCCTATACCAGAGGATGGTGGCATTGGAGTGCATGTTACTATAGACTTGAATGGTCAGGTCAAGTTTGGCCCAAATGTTGAATGGATTGACAGTGTTGATGATATCTCTAGCTTTCAGAATAAGTATGACTATTCAGTAAATGCAAATCGAGCTGAGCGTTTTTATCCAGAGATAAGAAAGTACTACCCAAATCTGAAGGATGGTTCTCTGGAACCTGGATATTCAGGGATTCGACCTAAACTTTCAGGACCCTTGCAGCCACCTTCTGATTTTGTCATACAGGGAGAGGACATTCATGGAGTACCTGGTCTTATTAATCTTTTTGGAATCGAGTCACCCGGTTTAACATCAAGCATGGCAATTGCAGAATTTATTTCTACGAGGTTTTTGTGA
>Glyma05g13880.1 sequence type=predicted peptide gene model=Glyma05g13880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLKQTIQRWERCISASRRRGDGHTKRKKHLFGKWVRSMSSSTIQSNDNRTTWDSVPKERVECVVIGAGVVGIAVARALALKGREVLVVESAPTFGTGTSSRNSEVIHAGIYYPLNSFKAIFCVRGREMLYEYCSKHDIPHKQIGKLIVATRSSEIPKLNDILNCGIQNGVDGLKIVDGVEAMKMEPELQCVKAILSPLTGIVDSHSLMLSLVGEAENQGTTFTYNSTVIGGHLEGSEICLHVTETDRLTEWKGTSILQPELLLIPKLVVNSTGLSSPVLAKRFNGPKSGVVPPAYYARGCYFTLSNTKNSPFRRLIYPIPEDGGIGVHVTIDLNGQVKFGPNVEWIDSVDDISSFQNKYDYSVNANRAERFYPEIRKYYPNLKDGSLEPGYSGIRPKLSGPLQPPSDFVIQGEDIHGVPGLINLFGIESPGLTSSMAIAEFISTRFL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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