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Report for Sequence Feature Glyma05g13600

Feature Type:gene_model
Chromosome:Gm05
Start:14135610
stop:14135957
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g13600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G56891AT Annotation by Michelle Graham. TAIR10: Heavy metal transport/detoxification superfamily protein | chr3:21064199-21064922 REVERSE LENGTH=166 SoyBaseE_val: 2.00E-27ISS
PTHR22814Panther COPPER TRANSPORT PROTEIN ATOX1-RELATED JGI ISS
PTHR22814:SF36Panther METAL ION BINDING JGI ISS
UniRef100_G7KP73UniRef Annotation by Michelle Graham. Most informative UniRef hit: Copper transport protein ATOX1-like protein n=1 Tax=Medicago truncatula RepID=G7KP73_MEDTR SoyBaseE_val: 2.00E-62ISS
UniRef100_I1K1V8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1K1V8_SOYBN SoyBaseE_val: 4.00E-66ISS

Expression Patterns of Glyma05g13600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g13600 not represented in the dataset
Glyma05g13600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g13600 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g086600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g13600
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g13600
>Glyma05g13600.2   sequence type=CDS   gene model=Glyma05g13600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGTGTGAAATTTTGCATGCAGGAATTGATAGCTTGGATATAGACATGGATCAACAAAAGGTGACAGTGACTGGGTATGTGGAGAAAGGGAAGGTATTAAGGATTGTTAGAAGAACAGGAAGAAAGGCAGAATATTGGCCATTCCCTTATGATAGTGAATACTACCCATATGCCTCTGAATACTTGGATGAGTCTACTTTTGCTTCTTCCTATAATTACTACAGGCATGGTTACAATGAGAGTGTTTATGGCTATTTTCCTGATCAAGCATACTGTACGGTCCAGGACGAAACAGTGTTTCTCTTTAGTGATGACAACGTTCATGCACCCTGCACTATCATGTGA
Predicted protein sequences of Glyma05g13600
>Glyma05g13600.2   sequence type=predicted peptide   gene model=Glyma05g13600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRCEILHAGIDSLDIDMDQQKVTVTGYVEKGKVLRIVRRTGRKAEYWPFPYDSEYYPYASEYLDESTFASSYNYYRHGYNESVYGYFPDQAYCTVQDETVFLFSDDNVHAPCTIM*






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