SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G22480 | AT | Annotation by Michelle Graham. TAIR10: prefoldin 2 | chr3:7969080-7969526 FORWARD LENGTH=148 | SoyBase | E_val: 1.00E-65 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0016272 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: prefoldin complex | SoyBase | N/A | ISS |
| GO:0051082 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding | SoyBase | N/A | ISS |
| KOG4098 | KOG | Molecular chaperone Prefoldin, subunit 2 | JGI | ISS | |
| PTHR13303 | Panther | PREFOLDIN SUBUNIT 2 | JGI | ISS | |
| PF01920 | PFAM | Prefoldin subunit | JGI | ISS | |
| UniRef100_B9RTR3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Prefoldin subunit, putative n=1 Tax=Ricinus communis RepID=B9RTR3_RICCO | SoyBase | E_val: 4.00E-79 | ISS |
| UniRef100_I1K1V3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1K1V3_SOYBN | SoyBase | E_val: 5.00E-107 | ISS |
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Glyma05g13110 not represented in the dataset |
Glyma05g13110 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g087300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g13110.3 sequence type=transcript gene model=Glyma05g13110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCTTTTAATTTTACCAAGCAACCTAAATTAAATTCTCGCAAAAATATAGATATATATAGTTTCTCTTTTTCTTTTTCAATCTCTCTACCTAATTTCTGTCTCTCTCTCTCCTGTATTTGTCTTGATTCCGATGCGAATGGTAATTGCAGAAACCCCAACCCTCCTTTCCTCTCCCTCCTCCTAGATCGAGTCAGAATCATGGCCAAAGCTGAAGGTGGCAAGGAACCAATAAATGAACAAGCAGTAGCAAATATGTATGCTGCAATGAGGTCTGAGCTCAACCAAATTTACTCCAAAATAACTGAACTGGAGATGGAAGTTAGTGAGCACACATTGGTTACCAATGCCATTCAACCACTTGACCAATCTAGACGATGCTATCGTATGATTGGAGGGGTGCTTGTGGAGAGAACCATCAAAGAGGTCTTGCCTGCTGTGCAGCGAAATAAAGAAGGACTCGAAGAGGTTGTGGCAAGGCTTAACGAGGCGTTGGAAAAGAAGAAAAAGGAAATTTCTGAGTTTGAGGCTAATTATAAAATCAGGATAAGGAAGGCTGATGCTGAGGTGAAGGATGAATCTGGTAGGAAGGAAGGGTCTGCTCAAGGGGTTCTTGTGGGTCCTGCAGGTGGAAGTGAATGATTTGTCTATTTTTATTTTGTTTGCTCAAACTAGTGGCCTACAATTGGGTGCAGGCAGTTTGATGATTTGTTTTATATGTAGACTAAGTGCGTGTCTGAATTAGATTCATGTTCCGTCCATATAGAAGCAAGTAAATGTAACTTCTGCATCATTTTGACGTGGTTTTGCTGCTTGAACGTGGATCCAAGACGTGTTTCCAACCACGCTCATTAGCAAGTATACCTTGCTTGATATGACCTTAAGTTTAATTGCATTGGGCTGAAAAAACTTATCTTCATTGGTTTGTGTTTATGTAGATTTTTGTATGCAAGAATAGAGCATATAATCGTGTGATCAAGCTATTTTGTCTCTCTTATGTATCGATATGTTTCATCAGGGGTAAAATGCTTTTCCTAAGCACCTTTTGTTTAATTTGGTTTTTGAAACAATGCAGAAAGAAGTAATGGAAGAAGGTTTAAGGCATTTTCCCAAACTAATTATCGAAAAATGTAAAGAGAAA >Glyma05g13110.4 sequence type=transcript gene model=Glyma05g13110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTATTGATGCTGTTGGCTACGTTTTTTTTAATGCAAGTCCATGTAACAATTTTCCTTTTAATTTTACCAAGCAACCTAAATTAAATTCTCGCAAAAATATAGATATATATAGTTTCTCTTTTTCTTTTTCAATCTCTCTACCTAATTTCTGTCTCTCTCTCTCCTGTATTTGTCTTGATTCCGATGCGAATGAATCATGGCCAAAGCTGAAGGTGGCAAGGAACCAATAAATGAACAAGCAGTAGCAAATATGTATGCTGCAATGAGGTCTGAGCTCAACCAAATTTACTCCAAAATAACTGAACTGGAGATGGAAGTTAGTGAGCACACATTGGTTACCAATGCCATTCAACCACTTGACCAATCTAGACGATGCTATCGTATGATTGGAGGGGTGCTTGTGGAGAGAACCATCAAAGAGGTCTTGCCTGCTGTGCAGCGAAATAAAGAAGGACTCGAAGAGGTTGTGGCAAGGCTTAACGAGGCGTTGGAAAAGAAGAAAAAGGAAATTTCTGAGTTTGAGGCTAATTATAAAATCAGGATAAGGAAGGCTGATGCTGAGGTGAAGGATGAATCTGGTAGGAAGGAAGGGTCTGCTCAAGGGGTTCTTGTGGGTCCTGCAGGTGGAAGTGAATGATTTGTCTATTTTTATTTTGTTTGCTCAAACTAGTGGCCTACAATTGGGTGCAGGCAGTTTGATGATTTGTTTTATATGTAGACTAAGTGCGTGTCTGAATTAGATTCATGTTCCGTCCATATAGAAGCAAGTAAATGTAACTTCTGCATCATTTTGACGTGGTTTTGCTGCTTGAACGTGGATCCAAGACGTGTTTCCAACCACGCTCATTAGCAAGTATACCTTGCTTGATATGACCTTAAGTTTAATTGCATTGGGCTGAAAAAACTTATCTTCATTGGTTTGTGTTTATGTAGATTTTTGTATGCAAGAATAGAGCATATAATCGTGTGATCAAGCTATTTTGTCTCTCTTATGTATCGATATGTTTCATCAGGGGTAAAATGCTTTTCCTAAGCACCTTTTGTTTAATTTGGTTTTTGAAACAATGCAGAAAGAAGTAATGGAAGAAGGTTTAAGGCATTTTCCCAAACTAATTATCGAAAAATGTAAAGAGAAA
>Glyma05g13110.1 sequence type=CDS gene model=Glyma05g13110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATAATTTGGCGACAACTGAAATAATCATGGCCAAAGCTGAAGGTGGCAAGGAACCAATAAATGAACAAGCAGTAGCAAATATGTATGCTGCAATGAGGTCTGAGCTCAACCAAATTTACTCCAAAATAACTGAACTGGAGATGGAAGTTAGTGAGCACACATTGGTTACCAATGCCATTCAACCACTTGACCAATCTAGACGATGCTATCGTATGATTGGAGGGGTGCTTGTGGAGAGAACCATCAAAGAGGTCTTGCCTGCTGTGCAGCGAAATAAAGAAGGACTCGAAGAGGTTGTGGCAAGGCTTAACGAGGCGTTGGAAAAGAAGAAAAAGGAAATTTCTGAGTTTGAGGCTAATTATAAAATCAGGATAAGGAAGGCTGATGCTGAGGTGAAGGATGAATCTGGTAGGAAGGAAGGGTCTGCTCAAGGGGTTCTTGTGGGTCCTGCAGGTGGAAGTGAATGA >Glyma05g13110.3 sequence type=CDS gene model=Glyma05g13110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCAAAGCTGAAGGTGGCAAGGAACCAATAAATGAACAAGCAGTAGCAAATATGTATGCTGCAATGAGGTCTGAGCTCAACCAAATTTACTCCAAAATAACTGAACTGGAGATGGAAGTTAGTGAGCACACATTGGTTACCAATGCCATTCAACCACTTGACCAATCTAGACGATGCTATCGTATGATTGGAGGGGTGCTTGTGGAGAGAACCATCAAAGAGGTCTTGCCTGCTGTGCAGCGAAATAAAGAAGGACTCGAAGAGGTTGTGGCAAGGCTTAACGAGGCGTTGGAAAAGAAGAAAAAGGAAATTTCTGAGTTTGAGGCTAATTATAAAATCAGGATAAGGAAGGCTGATGCTGAGGTGAAGGATGAATCTGGTAGGAAGGAAGGGTCTGCTCAAGGGGTTCTTGTGGGTCCTGCAGGTGGAAGTGAATGA >Glyma05g13110.4 sequence type=CDS gene model=Glyma05g13110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCAAAGCTGAAGGTGGCAAGGAACCAATAAATGAACAAGCAGTAGCAAATATGTATGCTGCAATGAGGTCTGAGCTCAACCAAATTTACTCCAAAATAACTGAACTGGAGATGGAAGTTAGTGAGCACACATTGGTTACCAATGCCATTCAACCACTTGACCAATCTAGACGATGCTATCGTATGATTGGAGGGGTGCTTGTGGAGAGAACCATCAAAGAGGTCTTGCCTGCTGTGCAGCGAAATAAAGAAGGACTCGAAGAGGTTGTGGCAAGGCTTAACGAGGCGTTGGAAAAGAAGAAAAAGGAAATTTCTGAGTTTGAGGCTAATTATAAAATCAGGATAAGGAAGGCTGATGCTGAGGTGAAGGATGAATCTGGTAGGAAGGAAGGGTCTGCTCAAGGGGTTCTTGTGGGTCCTGCAGGTGGAAGTGAATGA
>Glyma05g13110.1 sequence type=predicted peptide gene model=Glyma05g13110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDNLATTEIIMAKAEGGKEPINEQAVANMYAAMRSELNQIYSKITELEMEVSEHTLVTNAIQPLDQSRRCYRMIGGVLVERTIKEVLPAVQRNKEGLEEVVARLNEALEKKKKEISEFEANYKIRIRKADAEVKDESGRKEGSAQGVLVGPAGGSE* >Glyma05g13110.3 sequence type=predicted peptide gene model=Glyma05g13110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKAEGGKEPINEQAVANMYAAMRSELNQIYSKITELEMEVSEHTLVTNAIQPLDQSRRCYRMIGGVLVERTIKEVLPAVQRNKEGLEEVVARLNEALEKKKKEISEFEANYKIRIRKADAEVKDESGRKEGSAQGVLVGPAGGSE* >Glyma05g13110.4 sequence type=predicted peptide gene model=Glyma05g13110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKAEGGKEPINEQAVANMYAAMRSELNQIYSKITELEMEVSEHTLVTNAIQPLDQSRRCYRMIGGVLVERTIKEVLPAVQRNKEGLEEVVARLNEALEKKKKEISEFEANYKIRIRKADAEVKDESGRKEGSAQGVLVGPAGGSE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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