Glyma05g12992 - SoyBase

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Report for Sequence Feature Glyma05g12992

Feature Type:	gene_model
Chromosome:	Gm05
Start:	13195298
stop:	13205383
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g12992

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G65180	AT	Annotation by Michelle Graham. TAIR10: ENTH/VHS family protein \| chr5:26045625-26047806 FORWARD LENGTH=439	SoyBase	E_val: 3.00E-67	ISS
GO:0007059	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromosome segregation	SoyBase	N/A	ISS
GO:0007062	GO-bp	Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion	SoyBase	N/A	ISS
GO:0007129	GO-bp	Annotation by Michelle Graham. GO Biological Process: synapsis	SoyBase	N/A	ISS
GO:0007131	GO-bp	Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010332	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gamma radiation	SoyBase	N/A	ISS
GO:0031048	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA	SoyBase	N/A	ISS
GO:0032204	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance	SoyBase	N/A	ISS
GO:0032504	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organism reproduction	SoyBase	N/A	ISS
GO:0033044	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization	SoyBase	N/A	ISS
GO:0042138	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation	SoyBase	N/A	ISS
GO:0043247	GO-bp	Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage	SoyBase	N/A	ISS
GO:0045132	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2669	KOG	Regulator of nuclear mRNA	JGI		ISS
PTHR12460	Panther	UNCHARACTERIZED	JGI		ISS
PF04818	PFAM	Protein of unknown function, DUF618	JGI		ISS
UniRef100_G7L2P6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Regulation of nuclear pre-mRNA domain-containing protein 1B n=1 Tax=Medicago truncatula RepID=G7L2P6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_G7L2P6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Regulation of nuclear pre-mRNA domain-containing protein 1B n=1 Tax=Medicago truncatula RepID=G7L2P6_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g12992

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g12992 not represented in the dataset	Glyma05g12992 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g12992 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g087600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g12992

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g12992

Limit To All Plant Sequences

>Glyma05g12992.1   sequence type=CDS   gene model=Glyma05g12992   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCATTATCCCGTTTGTGTATTTCTCACCGGAAGAGAGCTAAAGAAATAGTTGAAACATGGGATAAATTGTTCAGTTCTTCCCAGAAGGAGCAGTGCATCTCTTTTCTGTACTTGGCTAATGACATCTTGCAAAATAGTAAACGGAAGGGCGGTGAGTTTGTTAATGAATTCTGGAAAGTTCTTCCAGCAGCTCTCAGGCGTGTTTATGACAGTGATGAACATGGAAAGAAAGCAGTAACCAGACTTATTGACATTTGGGAGGAGAGGAAGGTTTTTGGTTCACGGGGTCAGGGCCTTAAGGATGAAATAATGGGTCAGAATCCCCTTCCATCATCTACAAGTAATGGGAAGAGTTCTAATCCTATCAAGATAGTGAAGAGGGATGCCCACTCTGTGAGATTAAAACTGGCTGTTGGGTGTTTGCCCGAAAAATTGCTAACATCATTGCATTCTGTTCATGATGAACATCTTAATGAGGAATTTGCCTTAAACAAGTGCAATGCTGTTGTACACCAAGTGGGTAAACTTGTAGAAGATGCGGAAAATATATTGGCTCAAGGAAATCAGCTGGGATCCACATTGGTAAATGACTTGCAAGAACAGGAAAATGAGCTTAAGCAATATATGGTGCAACTTGAAAATGCCGAGGCTGCCAGGGCTACTTTACTTTCCCAGCTTAAAGATGCACTGCAGGAACAGGAATCAAGGCAAGAGCTTGTTCACACCCAGTTACTAGCTGCACAAGGCCAGATTGAGCAAGCTGCAAGTATCAGGAAGAGGTTTACCGTAGCACCAGAAGCTACTAGGGCGTTGGAGCAAAATCTTCCATCAGTTCAACCAAACAACACTCCTCTTCAGCCTTCTTTTACCCAACCACCTATATCATTTGCTCCTCCCCAAACCACTGAAGAAGATAAGAAGGCAGCTGCAGCTGCTGTTGCTGCTAAGCTTGCTGCCTCTACATCCTCTGCCCTTATGCTTACATCTGTTCTTTCTTCCCTTGTTGCAGAAGAAGCTGCCTCCATGAATGGTAGCTTAAACTCTACTGGGTTTACTTCAGGGTTACCTGTTTTCCGTCCAGAGAAAAGACAAAAACTTGAAAAACAAATGCATGCTTCTGAGTTTAACAGTACTGATATGGGGAGCTCTTCTTTTCTGGGCACTTTACAACAACCATCAGTAGCAAATGTGCCACTGACACACTCAATCAGCTTGCAACCCATACCACAACCCAACCAATCACAAGCTGCATTTGCTTCAGGTCCCCCACCTCCTCATTCCCCCGTGAACCCACCAGCAAATCAGTTTGTTCAATCTACTGGATTAATGGTTGGGGGAATTCCTTATGGATATGGATCAAACAACCTACCACCTCCACCTCCACCTCCTTTACCTCCACATGTGGCAATGGGGTTATCAATGGCCGGCATGCAGCCATCACAGTCACAGGCCCAGCAACAACAGCCGTCAGCAACTGGAGGATTTTACAGGCCACCAGACATAGGGTTTTATGGGCAAAGCCATTCATCAACACAACCAGCACCAGTACCTAGGCAGTGA

Predicted protein sequences of Glyma05g12992

Limit To All Plant Sequences

>Glyma05g12992.1   sequence type=predicted peptide   gene model=Glyma05g12992   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ALSRLCISHRKRAKEIVETWDKLFSSSQKEQCISFLYLANDILQNSKRKGGEFVNEFWKVLPAALRRVYDSDEHGKKAVTRLIDIWEERKVFGSRGQGLKDEIMGQNPLPSSTSNGKSSNPIKIVKRDAHSVRLKLAVGCLPEKLLTSLHSVHDEHLNEEFALNKCNAVVHQVGKLVEDAENILAQGNQLGSTLVNDLQEQENELKQYMVQLENAEAARATLLSQLKDALQEQESRQELVHTQLLAAQGQIEQAASIRKRFTVAPEATRALEQNLPSVQPNNTPLQPSFTQPPISFAPPQTTEEDKKAAAAAVAAKLAASTSSALMLTSVLSSLVAEEAASMNGSLNSTGFTSGLPVFRPEKRQKLEKQMHASEFNSTDMGSSSFLGTLQQPSVANVPLTHSISLQPIPQPNQSQAAFASGPPPPHSPVNPPANQFVQSTGLMVGGIPYGYGSNNLPPPPPPPLPPHVAMGLSMAGMQPSQSQAQQQQPSATGGFYRPPDIGFYGQSHSSTQPAPVPRQ*

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