Glyma05g12224 - SoyBase

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Report for Sequence Feature Glyma05g12224

Feature Type:	gene_model
Chromosome:	Gm05
Start:	12241591
stop:	12244614
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g12224

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13530	AT	Annotation by Michelle Graham. TAIR10: protein kinases;ubiquitin-protein ligases \| chr5:4345618-4354369 FORWARD LENGTH=1624	SoyBase	E_val: 2.00E-23	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009788	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0048589	GO-bp	Annotation by Michelle Graham. GO Biological Process: developmental growth	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005769	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: early endosome	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0043621	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein self-association	SoyBase	N/A	ISS
KOG4412	KOG	26S proteasome regulatory complex, subunit PSMD10	JGI		ISS
PTHR24198	Panther	ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAININ	JGI		ISS
PTHR24198:SF302	Panther		JGI		ISS
PF00023	PFAM	Ankyrin repeat	JGI		ISS
PF00635	PFAM	MSP (Major sperm protein) domain	JGI		ISS
UniRef100_D3J162	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hermes n=1 Tax=Medicago truncatula RepID=D3J162_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233940E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233940E related cluster n=1 Tax=unknown RepID=UPI000233940E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g12224

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g12224 not represented in the dataset	Glyma05g12224 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g12224 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g088400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g12224

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g12224

Limit To All Plant Sequences

>Glyma05g12224.1   sequence type=CDS   gene model=Glyma05g12224   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAGGCTCATAAGGTTAGACCCTTCAAACACAGTCCTAATCAGGGTTGAGCCAGGGCAAAAGTGCCACGGCAGGATCACCTTACACAACGTGATGTACACAATGCCAGTGGCCTTCAGGCTTCAACCACTCATCAAGACCCGTTACACAGTGAAGCCCCAATCAGGGATCATATCCCCTTTAGCCACACTTACCATAGACATCACCTACCATCTCCCACAAGGCTCGTCTCTCCCCCACTCTTTCCCTCACTCGAACGACTCTTTCCTCTTACACAGCGTTTTGGTTCCCGGCGCCGCCATCAAGGAACCCTCCTCCATGTTCGATGCTGTCCCCAGTGACTTGTTCAAGAAGAAACAGGTCTTCATCGACAGCGCCATCAGGGTCATGTTTGTGGGGCCTCACATTCTGGCTCGGCTAGTAACACAAGGTGCAACGGATGAAATAAGAGAAGTTTTAGAGAAAAGTGACCCATCATGGAGAAATGTTAACTCGACAGACCCACAAGGCCAAACGTTGCTCCACTTGGCGATTTCGCAAGGTAGAGCTGATCTCGTTCAGTTGCTCCTAGAATTCGAGGCTGACGTCGAAGCCTTAAACCGTTCTGGCTCAACCCCACTTGAGGCTGCATCGTCCTGCAACGAAGCCTTAATTGTTGAGCTTCTTTTGGCCCACAAAGCCAACACAGAACGGTCGGAATTGTCCATGTTCGGTCCGATCCACCACGCAGCCAGAGGAGGACACGTGGAGGTTATGAGACTTCTCTTGCTCAAAGGTGCCAAAGTGGATTCACTCGCTAAAGATGGCAACACAGCCTTGCACGTTGCAGTTGAAGAGCACACAAAGGACTGTGTTAGACTCCTTCTGGCAAACGGTGCCAGAACAGACGCTAAAAATACAAGAGAAGGTGACACGCCTTTGCACGTGGCATCAGCAATAGGAGATGAGAGCATGGTGAAGCTCTTGCTGCAAAAGGGTGGTGCCAACAAAGACGTGAGAAACAGACAAGGGAGAACCGCGTATGATATTGCAGTGGAAAACGGCCATGCACACCTCTACGACGCCTTGTGTTTGGGGGACAAACTGTGCGTGGCAGCAAGGAAAGGGGAAGTGAGGAGCATCCACAAGCTTCTAGAGAATGGTGCAGGGATCAATGGGAGGGACCAAAATGGTTGGACATCGCTGCACAGGGCCTCGTTCAAAGGGAGAATCGACACTGTGAAGCTTCTTGTAGAGAAGGGGGCGGAGGTGGATGCAAAGGACGAAGAAGGGTACACGGCGTTGCACTGTGCTGCTGAGTCGGGGCATGCTGACGTGACTGAGTTTTTGGTGAAGAGAGGTGCTGATGTTGAAGCCAGGACTAGGAAGGGTGTGAGTGCGTTGCAAATAGCTGAGTCGTTGCACTACGTGGGGATTACGAGGGTTCTTGTTAATGGTGGGGCCAGTAGGGAAAATTGTGATGTGGGTAAAGTGGCGGCACTTGGTGCAATTGCGTTTGGGACTAAAATGGAAGCTAGGGGTGTCATGAATAAAAAGAAGAGGGGTGGTGGTGGCAGAGCCAGAATGCTAAATGGTGCTAGCTTTGATCGTTCAATGGCTCTGGCTGTGCTCTAA

Predicted protein sequences of Glyma05g12224

Limit To All Plant Sequences

>Glyma05g12224.1   sequence type=predicted peptide   gene model=Glyma05g12224   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRLIRLDPSNTVLIRVEPGQKCHGRITLHNVMYTMPVAFRLQPLIKTRYTVKPQSGIISPLATLTIDITYHLPQGSSLPHSFPHSNDSFLLHSVLVPGAAIKEPSSMFDAVPSDLFKKKQVFIDSAIRVMFVGPHILARLVTQGATDEIREVLEKSDPSWRNVNSTDPQGQTLLHLAISQGRADLVQLLLEFEADVEALNRSGSTPLEAASSCNEALIVELLLAHKANTERSELSMFGPIHHAARGGHVEVMRLLLLKGAKVDSLAKDGNTALHVAVEEHTKDCVRLLLANGARTDAKNTREGDTPLHVASAIGDESMVKLLLQKGGANKDVRNRQGRTAYDIAVENGHAHLYDALCLGDKLCVAARKGEVRSIHKLLENGAGINGRDQNGWTSLHRASFKGRIDTVKLLVEKGAEVDAKDEEGYTALHCAAESGHADVTEFLVKRGADVEARTRKGVSALQIAESLHYVGITRVLVNGGASRENCDVGKVAALGAIAFGTKMEARGVMNKKKRGGGGRARMLNGASFDRSMALAVL*

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