SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G55510 | AT | Annotation by Michelle Graham. TAIR10: Noc2p family | chr3:20579232-20582124 FORWARD LENGTH=594 | SoyBase | E_val: 1.00E-176 | ISS |
| GO:0001510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA methylation | SoyBase | N/A | ISS |
| GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0010582 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral meristem determinacy | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| KOG2256 | KOG | Predicted protein involved in nuclear export of pre-ribosomes | JGI | ISS | |
| PTHR12687 | Panther | NUCLEOLAR COMPLEX 2 AND RAD4-RELATED | JGI | ISS | |
| PTHR12687:SF5 | Panther | SIMILAR TO NUCLEOLAR COMPLEX 2 | JGI | ISS | |
| PF03715 | PFAM | Noc2p family | JGI | ISS | |
| UniRef100_I1K1U3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1K1U3_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q0WVH0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Noc2p family protein n=1 Tax=Arabidopsis thaliana RepID=Q0WVH0_ARATH | SoyBase | E_val: 5.00E-174 | ISS |
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Glyma05g11642 not represented in the dataset |
Glyma05g11642 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g088900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g11642.1 sequence type=CDS gene model=Glyma05g11642 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAAGTTGGGAAAGAAGGCAAGGAAGTTTGCGAAAAAGAATTTGCAGTCTGTTTTGAGGAACAAAAGGAAGTTAAATTCCAAGTTCAAAAGGAAAGCATCAAAAGAGAAGACCGGTAGACTCTGTAGTGAGGAGAGTAGACCAGATGAAGAGAAGACAAACAATTCGAGGCAGAGGAAGACCCAAAAAGACTATAAGAGAGTCGTTGAAGAATTTCAAGACACTTCTCTGGATGCTCTATTCCGTGAAGATGACAGTGAGATGCTTGGAGATGATTCAGACAGTGACGGATTTCTTTCAGATGCATCTGTTGATTCATTGTGTAAACTGGTCAAAGAACAGTGTAGTGTTCCTGCCCTTACATGTCTCTTAAATGCTTATAGGGCAGCATGCCACAATGTTTCTGAAGCAACCAGTAAGAGTGGAACTTTCTGCAAGATATTTATGTTCATGCTACATGAGGCTGATACTACATTTAGGAGGTTATTGGGAATATCAAGCTCAAGTTCCAGGAAGGAAACTGTTTTGGACCTAAAGAATACAACAAAGTGGTTGTCTGTTAGACCACTTATTAAGTCGTACATAAGGAGTACTGTGTTTCTCCTGAACCAGGTCACTGACTCTGAAGTATTGGCCTTCTCAATTTGTCGGCTCAGAGCTTCAATTATTTTTCTCTTTGCATTTCCATCTTTACTGCGCAATATTCTTAAGATTTCTGTCCATCTCTGGGCAACAGGTCATGGGTCTCTATCGTCACACTTCTTTCTCATTATACAAGATATAGTTTCAGAGTCTAGCTCAAATTGGTTCGACTTCTGCTTTGTGAAAACATACAAGGCCTTCATTAATCACTCTCAATTTGTTGAGAGAAAGTTTGAACATATACATTTTCTAAGGAACTCCTTTGTGGAGCTATGTTGTTTAGATATGCAGTATTGGCAGTACATCAATTGCATTGATCTCTGGGTTACATTTATATCAGCAAATATACATGACTATGATCTTCAGCCATTGCTGTATATGATCGTACAGATTATAAATGAGGTTGCTCTCCTGTTTCCTGGCCCTAGATATTTACCACTGAGACTAAGATGTATCCATTGGCTTAATAATCTTTCTGGTTCTAGTGGGGTTTTCATCCCTGTTACATCATTGGTGCTGGATGTTTTAGAATACAAAATTACCAAGGATACTTCCGAAGCATTGGTTATAAAATCACGTGGCTTCCAAGAAGAGTGTGTCTCATCTGCCATTGAACTCCTTATGGAGCACTTTGCAAAATGGAGCTACCATATATCTTTTCCTGAGCTGGCAACAGCTCCACTTATACAGCTCAAGAAGGTCTTTGAGAGAACTTCTGTTGAGAGTTTCAAACGTGTTATCAAGCGTTTCATTGATCAGGTGGAGCTGAATATTGGCTTTGTGCAAAAGAAAAGAGAAGAGGTGCCTTTCTCACCGAAGGATCAGCAATCAGTTGAATCATTTCTTCAGGTTGAAAAACGTAATGGTAACACTCCATTTACACAATATTATAAAAGCATCATGAGCAAGGCTTCTTCTAGGAAATCAATTTCACATAGAAAG
>Glyma05g11642.1 sequence type=predicted peptide gene model=Glyma05g11642 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGKLGKKARKFAKKNLQSVLRNKRKLNSKFKRKASKEKTGRLCSEESRPDEEKTNNSRQRKTQKDYKRVVEEFQDTSLDALFREDDSEMLGDDSDSDGFLSDASVDSLCKLVKEQCSVPALTCLLNAYRAACHNVSEATSKSGTFCKIFMFMLHEADTTFRRLLGISSSSSRKETVLDLKNTTKWLSVRPLIKSYIRSTVFLLNQVTDSEVLAFSICRLRASIIFLFAFPSLLRNILKISVHLWATGHGSLSSHFFLIIQDIVSESSSNWFDFCFVKTYKAFINHSQFVERKFEHIHFLRNSFVELCCLDMQYWQYINCIDLWVTFISANIHDYDLQPLLYMIVQIINEVALLFPGPRYLPLRLRCIHWLNNLSGSSGVFIPVTSLVLDVLEYKITKDTSEALVIKSRGFQEECVSSAIELLMEHFAKWSYHISFPELATAPLIQLKKVFERTSVESFKRVIKRFIDQVELNIGFVQKKREEVPFSPKDQQSVESFLQVEKRNGNTPFTQYYKSIMSKASSRKSISHRK
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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