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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G62800 | AT | Annotation by Michelle Graham. TAIR10: double-stranded-RNA-binding protein 4 | chr3:23225749-23227163 REVERSE LENGTH=329 | SoyBase | E_val: 1.00E-50 | ISS |
| GO:0010267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0051607 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to virus | SoyBase | N/A | ISS |
| GO:0060145 | GO-bp | Annotation by Michelle Graham. GO Biological Process: viral gene silencing in virus induced gene silencing | SoyBase | N/A | ISS |
| GO:0070919 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0003725 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: double-stranded RNA binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PTHR10910 | Panther | EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN | JGI | ISS | |
| PTHR10910:SF39 | Panther | JGI | ISS | ||
| PF00035 | PFAM | Double-stranded RNA binding motif | JGI | ISS | |
| UniRef100_G7J6L1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Double-stranded RNA binding protein n=1 Tax=Medicago truncatula RepID=G7J6L1_MEDTR | SoyBase | E_val: 2.00E-48 | ISS |
| UniRef100_UPI000233AA1C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233AA1C related cluster n=1 Tax=unknown RepID=UPI000233AA1C | SoyBase | E_val: 9.00E-88 | ISS |
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Glyma05g10865 not represented in the dataset |
Glyma05g10865 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g090000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g10865.2 sequence type=transcript gene model=Glyma05g10865 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGTGGAAGAAGAAGAAGAAAAGCCTGGCGGGAGAGAAGAAGAAAAGAAGCGCTGGGTGCACGAGATTTTTAAAAAAATAAAAGGGCAATTTTGTCTTTTCGCTTTAAGTGCTGGGTGCACCAGCATAGCAACTCCCTTAATTCTATTGTCTTTGTCCTACTATGAAGGGTTCGATTGCAGTTCCTTTGTTGTCTCGTCAGTAGTGGAAGTTGTGAAGAACGTTGAAGGTGAAGGAGGAACAGCGAGCGAGCGAGCAATGTACAAAACGAGGTTGCAGGAATTGTGTCAGAGAAGGTCATGGACCTTACCTACCTACGACAACAGCAGAGAAGGCCCCGATCACAACCCTCGCTTCACTTCCACCGTTAATGTTAACGGCGTCTCCTTCCACACCCCTTCTCCCACCCGCAGCGCCAAACAGGCCCAAAACGACGCCGCCATGCTCGCCTTCCTCCATTTCTCCCCGCCCTCACCGTCAACGTCATGTCCCACTTTTCCTCAACACTCTCTCTCCATTTCGGCTCTTTCTTCTTTTCCTCAGCCTTCTCTTTTCGCCTCATCTTCTGGTTCACCTGATCCCAGCTCTGTTGTTGATGATATACTTCTCACAAATGGAGTGTTGCAACCTAAATTAGAAGAAGTGTGCCAAACATCTCAAATCAGTGGCCCTGTAATAGCTGTTAGAGATACGATAACAGCAGAAGATCAAAAAAATATGTTACATTTGTACAAGAACCAGCTGCAAAGCTATGTTCAAAAGAACAATCTAAGTCTTCCAGTATATTCTTCTGAGTGGGAGGGTCCTCCTCATGCTATGCGTTTCAAGTGCAAAGTCACTGTTGATGGACAAACCTATGAAAGTGACAAGTTCTATTCTACGTTGAAGGATGCTGAACATGCAGCAGCTGAAGCTGCTTTAATATCATTATCACCAGGCAGAGTTCAAGAGGGTCATGTTGGATTATACAAAAATCTTTTACAAGAATTGGCTCAAAAGGAAGGATTTCGTTTACCCATTTATAACACAAATAAATCTGGTGAAGCTCATATGCCAATATTTGTGTCACAAGTAGAGGTAGAAGGGGAGCTTTTTACTGGGGAAGAAGCTAAATCCAAGAAGCAAGCAGAGATGAGTGCAGCCAAGGTGGCTTATATGGCTTTGAAAGAATGCAAAGTTCATCAAGGACAAACTCATGAGTTCTCACCTGACTGCTCAGAGGCAAATGTCATAACTGGTTTAAAACACCATGCTAATCCAAAATCACCTGTAAGCCCTGGATTAGTCGACAGGAATCAACATAACAAAGATAAAGGAATTGAGTTCGGGGAGGATGATTGGCAGTTCTAAAGAGGTTGATGGTCTCTATCTCTTTGAAGATGAGTCTGGTCCTAAGGAGAAACTCCAGAAAAATTGTCTCAATTCAATTCTGATTCACGAAGATGAAGAAATAATGTTATGGCATTATCGGCTAGGTCACCCCAATTTTTTGTATTTGAAGCATTTATTTCCTGACCTCTTTAAAAATAAAAATCCAAATTTGTTTTCTTGTGAAATTTGTCAATTTGCAAAACATCATCGTTCCTCTTATTCCCCTAAGGATTATAAACAATCTAGTCCATTCACCTTAATTCATAGTGACGTTTGGGGACCTTGTTGGGACCCTACACCAAATGGAAAAACATGGTTTATAACCTTCATAGATGATCATACTCAGATAACATGGGTTTACTTGATGAAAACAAAATCTGAGGTTGAAAGCATATTCAAAACTTTTTTTTCAATTGATACAAACACAATTTCAAGTGAAAATAAAAGTTTTCCGTAGTGACAATGGAAGGGAATATTTTAACAAGCACTTAAACAAGTTCTTTCTTGAAAATGACATAATTCATCAAAGCTCTTGTGTTGACACTCCATAACAAAATGGAGTGGCTGAACGGAAAAATAGACACCTTCTTGAAGTAGCTAGGGCATTATTGTTTCAAAATAAGGCACCCAAATATCTTTGGGGTGAAGCAATTCTCATTGGAACATATTTGATAAATAGAATGCCTAGCAAAATCTTGAATTTCAAAACTCCATTAGATGTTTTCACAAGTGCTTTTCCAAATAACAGGCTCTCGTGTACTCTACCTCTTAAAATATTTGGGTGCACTGTTTTTGTCATATTCATGAACCAAACCTAGGGAAACTTGAGCCTAGAGCAAAAAAATGTGTTTTTGTTGGCTATGCTCCCAACCAAAGGGATACAAATGTTTTGATCCCACTTCCAAGAAAACCTTTGTTACTATGGATGTTACCTTTTTTGAAAAAACTCCTTTTTTTAGTGATCGTCTTCGGGGGGGGGGGAGACAAGAGGAAGATGTTCAATATTTTCAAACACAATTTAGATTTCTCAGAAAGTTTGGATTTTTTGGAAAATTTAGAAGAGGCTGACATTGGAAAAGCAAAAAATTTGGGTGAATCAAACCAGTCAAGTCAAGACAGCCATGAAAATGATATTTCAGAAACTGTATTGTCAAAACCAGAAGTTGAAAATGAGACAATTAGAGTTGGTAACAAAGGTATTCAACCCTTTGACCGTGTTTACTTAAGGAAAAAAAGACCTCAAAGAAAAGAACGAACCAAATGATTCTTGAACTGCCAGTCATCCGAGGATCCATCAGGCAAGTCAGATAAGAGTTCTTCATTTCCATTTTCAACTCATAAAGGACAGGCTCCGGAGTTCTCGTCTGACCACTCTGAGTCAAATGTGGTAACTGCTCTGCAATACAATGCTGATCCAAATTCACTTGTAGACCCTGGATTAGTCACCTGGAATCAACATAGCAAAGATAAATTGAAGAATGTATCGTCTTCATCTGAAAATACGAATGGCTGCACAGAGGATTCTTCCTTGTCAAGTGACAAGTCTGCACCTTCACTCTCTGGCAGCACCAAAGTGGTTTCTGACTCAAGTAACACGTATTCAACTGCAGTAGAACGGGTCGTTGTTTACTCACGCAAGACCAATGTGGAAATTGAAGATGGTGGCACTATATTGCCGATTAGCGATGACAGGTGGGTTGCTTACTCATATTCTCATTGAGATAGTTGGAACAGTTGCAGGCTCTCCTGTGTCATATTTTGCGTCTCTCTCCGAATTGATTTGTATAGAAGGATTTGACTCCCGGTAAATTTAGAAAACAAAACGTGGAACTTGTAACCTATTGATTAAAAACCTAACTGTTAATATTTTAATAACTTAGGAAACTGAAGCAGATTAGTTATTATTCTGTCATCAACAGCTAGGAATTTCTCTACCAAGGATTATGTAGATCATTTAAGAATATAAACATGTTAATAACTATGGGTGTGGGGAAACGCCGGAGGTCCTTATATATATATATATATATATATACCCTTTAATGTATTATAATTTTTATCTTTTT
>Glyma05g10865.1 sequence type=CDS gene model=Glyma05g10865 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGTGGAAGAAGAAGAAGAAAAGCCTGGCGGGAGAGAAGAAGAAAAGAAGCGCTGGGTGCACGAGATTTTTAAAAAAATAAAAGGGCAATTTTGTCTTTTCGCTTTAAGTGCTGGGTGCACCAGCATAGCAACTCCCTTAATTCTATTGTCTTTGTCCTACTATGAAGGGTTCGATTGCAGTTCCTTTGTTGTCTCGTCAGTAGTGGAAGTTGTGAAGAACGTTGAAGGTGAAGGAGGAACAGCGAGCGAGCGAGCAATGTACAAAACGAGGTTGCAGGAATTGTGTCAGAGAAGGTCATGGACCTTACCTACCTACGACAACAGCAGAGAAGGCCCCGATCACAACCCTCGCTTCACTTCCACCGTTAATGTTAACGGCGTCTCCTTCCACACCCCTTCTCCCACCCGCAGCGCCAAACAGGCCCAAAACGACGCCGCCATGCTCGCCTTCCTCCATTTCTCCCCGCCCTCACCGTCAACGTCATGTCCCACTTTTCCTCAACACTCTCTCTCCATTTCGGCTCTTTCTTCTTTTCCTCAGCCTTCTCTTTTCGCCTCATCTTCTGGTTCACCTGATCCCAGCTCTGTTGTTGATGATATACTTCTCACAAATGGAGTGTTGCAACCTAAATTAGAAGAAGTGTGCCAAACATCTCAAATCAGTGGCCCTGTAATAGCTGTTAGAGATACGATAACAGCAGAAGATCAAAAAAATATGTTACATTTGTACAAGAACCAGCTGCAAAGCTATGTTCAAAAGAACAATCTAAGTCTTCCAGTATATTCTTCTGAGTGGGAGGGTCCTCCTCATGCTATGCGTTTCAAGTGCAAAGTCACTGTTGATGGACAAACCTATGAAAGTGACAAGTTCTATTCTACGTTGAAGGATGCTGAACATGCAGCAGCTGAAGCTGCTTTAATATCATTATCACCAGGCAGAGTTCAAGAGGGTCATGTTGGATTATACAAAAATCTTTTACAAGAATTGGCTCAAAAGGAAGGATTTCGTTTACCCATTTATAACACAAATAAATCTGGTGAAGCTCATATGCCAATATTTGTGTCACAAGTAGAGGTAGAAGGGGAGCTTTTTACTGGGGAAGAAGCTAAATCCAAGAAGCAAGCAGAGATGAGTGCAGCCAAGGTGGCTTATATGGCTTTGAAAGAATGCAAAGTTCATCAAGGACAAACTCATGAGTTCTCACCTGACTGCTCAGAGGCAAATGTCATAACTGGTTTAAAACACCATGCTAATCCAAAATCACCTGTAAGCCCTGGATTAGTCGACAGGAATCAACATAACAAAGATAAAGGCAAGTCAGATAAGAGTTCTTCATTTCCATTTTCAACTCATAAAGGACAGGCTCCGGAGTTCTCGTCTGACCACTCTGAGTCAAATGTGGTAACTGCTCTGCAATACAATGCTGATCCAAATTCACTTGTAGACCCTGGATTAGTCACCTGGAATCAACATAGCAAAGATAAATTGAAGAATGTATCGTCTTCATCTGAAAATACGAATGGCTGCACAGAGGATTCTTCCTTGTCAAGTGACAAGTCTGCACCTTCACTCTCTGGCAGCACCAAAGTGGTTTCTGACTCAAGTAACACGTATTCAACTGCAGTAGAACGGGTCGTTGTTTACTCACGCAAGACCAATGTGGAAATTGAAGATGGTGGCACTATATTGCCGATTAGCGATGACAGGTGGGTTGCTTACTCATATTCTCATTGA >Glyma05g10865.2 sequence type=CDS gene model=Glyma05g10865 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGTGGAAGAAGAAGAAGAAAAGCCTGGCGGGAGAGAAGAAGAAAAGAAGCGCTGGGTGCACGAGATTTTTAAAAAAATAAAAGGGCAATTTTGTCTTTTCGCTTTAAGTGCTGGGTGCACCAGCATAGCAACTCCCTTAATTCTATTGTCTTTGTCCTACTATGAAGGGTTCGATTGCAGTTCCTTTGTTGTCTCGTCAGTAGTGGAAGTTGTGAAGAACGTTGAAGGTGAAGGAGGAACAGCGAGCGAGCGAGCAATGTACAAAACGAGGTTGCAGGAATTGTGTCAGAGAAGGTCATGGACCTTACCTACCTACGACAACAGCAGAGAAGGCCCCGATCACAACCCTCGCTTCACTTCCACCGTTAATGTTAACGGCGTCTCCTTCCACACCCCTTCTCCCACCCGCAGCGCCAAACAGGCCCAAAACGACGCCGCCATGCTCGCCTTCCTCCATTTCTCCCCGCCCTCACCGTCAACGTCATGTCCCACTTTTCCTCAACACTCTCTCTCCATTTCGGCTCTTTCTTCTTTTCCTCAGCCTTCTCTTTTCGCCTCATCTTCTGGTTCACCTGATCCCAGCTCTGTTGTTGATGATATACTTCTCACAAATGGAGTGTTGCAACCTAAATTAGAAGAAGTGTGCCAAACATCTCAAATCAGTGGCCCTGTAATAGCTGTTAGAGATACGATAACAGCAGAAGATCAAAAAAATATGTTACATTTGTACAAGAACCAGCTGCAAAGCTATGTTCAAAAGAACAATCTAAGTCTTCCAGTATATTCTTCTGAGTGGGAGGGTCCTCCTCATGCTATGCGTTTCAAGTGCAAAGTCACTGTTGATGGACAAACCTATGAAAGTGACAAGTTCTATTCTACGTTGAAGGATGCTGAACATGCAGCAGCTGAAGCTGCTTTAATATCATTATCACCAGGCAGAGTTCAAGAGGGTCATGTTGGATTATACAAAAATCTTTTACAAGAATTGGCTCAAAAGGAAGGATTTCGTTTACCCATTTATAACACAAATAAATCTGGTGAAGCTCATATGCCAATATTTGTGTCACAAGTAGAGGTAGAAGGGGAGCTTTTTACTGGGGAAGAAGCTAAATCCAAGAAGCAAGCAGAGATGAGTGCAGCCAAGGTGGCTTATATGGCTTTGAAAGAATGCAAAGTTCATCAAGGACAAACTCATGAGTTCTCACCTGACTGCTCAGAGGCAAATGTCATAACTGGTTTAAAACACCATGCTAATCCAAAATCACCTGTAAGCCCTGGATTAGTCGACAGGAATCAACATAACAAAGATAAAGGAATTGAGTTCGGGGAGGATGATTGGCAGTTCTAA
>Glyma05g10865.1 sequence type=predicted peptide gene model=Glyma05g10865 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKVEEEEEKPGGREEEKKRWVHEIFKKIKGQFCLFALSAGCTSIATPLILLSLSYYEGFDCSSFVVSSVVEVVKNVEGEGGTASERAMYKTRLQELCQRRSWTLPTYDNSREGPDHNPRFTSTVNVNGVSFHTPSPTRSAKQAQNDAAMLAFLHFSPPSPSTSCPTFPQHSLSISALSSFPQPSLFASSSGSPDPSSVVDDILLTNGVLQPKLEEVCQTSQISGPVIAVRDTITAEDQKNMLHLYKNQLQSYVQKNNLSLPVYSSEWEGPPHAMRFKCKVTVDGQTYESDKFYSTLKDAEHAAAEAALISLSPGRVQEGHVGLYKNLLQELAQKEGFRLPIYNTNKSGEAHMPIFVSQVEVEGELFTGEEAKSKKQAEMSAAKVAYMALKECKVHQGQTHEFSPDCSEANVITGLKHHANPKSPVSPGLVDRNQHNKDKGKSDKSSSFPFSTHKGQAPEFSSDHSESNVVTALQYNADPNSLVDPGLVTWNQHSKDKLKNVSSSSENTNGCTEDSSLSSDKSAPSLSGSTKVVSDSSNTYSTAVERVVVYSRKTNVEIEDGGTILPISDDRWVAYSYSH* >Glyma05g10865.2 sequence type=predicted peptide gene model=Glyma05g10865 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKVEEEEEKPGGREEEKKRWVHEIFKKIKGQFCLFALSAGCTSIATPLILLSLSYYEGFDCSSFVVSSVVEVVKNVEGEGGTASERAMYKTRLQELCQRRSWTLPTYDNSREGPDHNPRFTSTVNVNGVSFHTPSPTRSAKQAQNDAAMLAFLHFSPPSPSTSCPTFPQHSLSISALSSFPQPSLFASSSGSPDPSSVVDDILLTNGVLQPKLEEVCQTSQISGPVIAVRDTITAEDQKNMLHLYKNQLQSYVQKNNLSLPVYSSEWEGPPHAMRFKCKVTVDGQTYESDKFYSTLKDAEHAAAEAALISLSPGRVQEGHVGLYKNLLQELAQKEGFRLPIYNTNKSGEAHMPIFVSQVEVEGELFTGEEAKSKKQAEMSAAKVAYMALKECKVHQGQTHEFSPDCSEANVITGLKHHANPKSPVSPGLVDRNQHNKDKGIEFGEDDWQF*
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