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Report for Sequence Feature Glyma05g10390

Feature Type:gene_model
Chromosome:Gm05
Start:10574660
stop:10578443
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g10390
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G50560AT Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr3:18761247-18763835 REVERSE LENGTH=272 SoyBaseE_val: 1.00E-120ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
KOG1014 KOG 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 JGI ISS
PTHR24320Panther FAMILY NOT NAMED JGI ISS
PTHR24320:SF40Panther JGI ISS
PF00106PFAM short chain dehydrogenase JGI ISS
UniRef100_B9S8J4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Short-chain dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9S8J4_RICCO SoyBaseE_val: 8.00E-153ISS
UniRef100_UPI0002339F64UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339F64 related cluster n=1 Tax=unknown RepID=UPI0002339F64 SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g10390
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g10390 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g090600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g10390
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g10390
>Glyma05g10390.2   sequence type=CDS   gene model=Glyma05g10390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAAGCATGGCAAGCTCGGCTTCCTCGCGAGGCATTGCAGCCATCGTCGGTGTGGGCCCCAACCTTGGCCTCTCCATCGCTCGCAAGTTCGCTCACGAAGGCTACACAGTTGCCATCCTCGCGCGTGACTTGGGGAGGTTGTCAAGATTTGCTGACGAAATAGCGAGGGAAGAGAAGGCGCAGGTTTTTGCTATAAGAATAGACTGTTCCGATTCAAGAAGCGTGAGAGAGGCATTTGAAGGAGTTCTCTCTCTGGGGTTCGTGGAAATTCTCGTCTACAATGCTTACCAGCCATTACCTTGGTACCCCACCTCCTTCCAAGACCTTCGCGTTGATTCCTTCGAAAAATCCCTCGCCATTTCTTCCGTCGGTGCCTTCCACTGCGCTCAACAGGTGCTGTCGGGCATGGTTGAAAGGGGAAAGGGAACGATTCTCTTCACTGGCTGCTCCGCTTCTCTGAACGGCATTGTTGGATACTCTGAACTATGCTGTGGGAAATTCGCTTTGAGAGCACTATCGCAATGTTTGGCCAAGGAATTTCAACCTCAGGGAGTGCACGTAGCTCATGTTATCATTGACGGTGTCATTGGCCCACCCAGAGGACCAATGTTGACGACGACGTCATCATCGTCGCAGAGGAGAAATTCATTGGGGGAGCAAAGCAGTGGAGTAGTGGGAGGAGGTGAGGGTACTATGGACCCGGACTCACTCGCTCAAACCTTCTGGCACTTGCACGTTCAGGACCGAAACGCTTGGACCCAGGAGATGGATCTTCGCTCACCCTCTGCTAGATTCTTCTAG
Predicted protein sequences of Glyma05g10390
>Glyma05g10390.2   sequence type=predicted peptide   gene model=Glyma05g10390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRSMASSASSRGIAAIVGVGPNLGLSIARKFAHEGYTVAILARDLGRLSRFADEIAREEKAQVFAIRIDCSDSRSVREAFEGVLSLGFVEILVYNAYQPLPWYPTSFQDLRVDSFEKSLAISSVGAFHCAQQVLSGMVERGKGTILFTGCSASLNGIVGYSELCCGKFALRALSQCLAKEFQPQGVHVAHVIIDGVIGPPRGPMLTTTSSSSQRRNSLGEQSSGVVGGGEGTMDPDSLAQTFWHLHVQDRNAWTQEMDLRSPSARFF*






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