Glyma05g10140 - SoyBase

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Report for Sequence Feature Glyma05g10140

Feature Type:	gene_model
Chromosome:	Gm05
Start:	10212799
stop:	10218460
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g10140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G50520	AT	Annotation by Michelle Graham. TAIR10: Phosphoglycerate mutase family protein \| chr3:18748058-18749418 FORWARD LENGTH=230	SoyBase	E_val: 2.00E-104	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
KOG0235	KOG	Phosphoglycerate mutase	JGI		ISS
PTHR23029	Panther	PHOSPHOGLYCERATE MUTASE	JGI		ISS
PF00300	PFAM	Phosphoglycerate mutase family	JGI		ISS
UniRef100_G7LGE0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Medicago truncatula RepID=G7LGE0_MEDTR	SoyBase	E_val: 1.00E-118	ISS
UniRef100_I1K1S4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K1S4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g10140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g10140 not represented in the dataset	Glyma05g10140 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g10140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g080400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g10140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g10140

Limit To All Plant Sequences

>Glyma05g10140.2   sequence type=transcript   gene model=Glyma05g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAATAACCAATCGTATTAAAGGAGTGTTGTTATCACTCCTCTAAATATAAAGATCAGCGAAAACAAGCGCAGCTTCATTGTTTGACTCTGACTCACTCGCTCGCTCCCTCCCTCAGAAACCATGGCCGAATTTGCCATCAACAACAACAACAACGGTTCCCATTCCAGCATTAACAGCCCCCATCCTGATTATGCGGAGATTGTTGTGGTGCGTCATGGCGAAACAGCTTGGAATGCTACTGCAAAAATCCAGGGGCACCTGGATGTTGAATTAAATGAAAATGGAAGACAGCAAGCAGCTGTAGTGGCTGATAGACTATCCAGGGAACCTAAGGCCTCTGTTATATATTCTTCTGACTTGAAACGGGCTTTTGAAACAGCACTGATAGTTGCATCCAAGTGTGGAGGGATCGAGGTTGTCAAGGATTCTGACCTACGGGAGAGACACCTAGGGGATCTTCAAGGCCATGTTTTTCATGAAATAGCAAAAACTAATCCCACAGCTTACAAGGCTTTTGTGTCTAAGAACGAAGATCAAGAAATACCAGGTGGTGGAGAAAGTCTTGTTCAACTTTATGATCGCAGCACATCTGCATTGCTTAAAATTGGCTTAAAGCATAAAGATGTTGTATCTCTTTTCAAAGTCCACTAACTGCTACATTAGGCTGATGTTAGCCGTGTTAATTGCAGGGGAGCGAGTAATTGTTGTCTCTCATGGAGGATTCATCAGAGCCCTTTACAAGTGGGCATGCCCAAATGGTAAGCCTGGGAAGGTACTCAATACATGTGTTAGTGTTTTTCACTTGTACGGTGAGGACAAATGGACCTTAAAAGTGTGGGGTGATGTCAGTCATCTGAACGAAACTGGATTTCTAGAGTCTGGTTTTGGAGGTGATAGAAATTCTGGTTAGGCCATTGTTTCCTATTTAAGGTAATAAAGGTTTGATTGTTTCCCATCCGAAGTTAATAAAAGATTAGAGAAAGAGCAGAAAATGGATATTAATCAGTGGTGCTAAATATGATTTTGGCCCCTATTTATGTTTTGTATCTTAGCATGCAAATATATGGTCACCATGTAAGGATATGCCTAAACTATTTAATTTTGTGGAGGTGATGTCAATCTCCTTTATAGAATTGTTTCTTTTAAAATCTTTTCGAAGCTTTCATGGAGTGATGAATGTAATGATACACTTTTCATGTTAGTATTTTTAATTTGTATATATCGGTAAGCCTTTTAAACATCCATAGCATGCATGACTACAAACGATAGAAGTTTGAAGGCTCGTC

>Glyma05g10140.3   sequence type=transcript   gene model=Glyma05g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAATAACCAATCGTATTAAAGGAGTGTTGTTATCACTCCTCTAAATATAAAGATCAGCGAAAACAAGCGCAGCTTCATTGTTTGACTCTGACTCACTCGCTCGCTCCCTCCCTCAGAAACCATGGCCGAATTTGCCATCAACAACAACAACAACGGTTCCCATTCCAGCATTAACAGCCCCCATCCTGATTATGCGGAGATTGTTGTGGTGCGTCATGGCGAAACAGCTTGGAATGCTACTGCAAAAATCCAGGGGCACCTGGATGTTGAATTAAATGAAAATGGAAGACAGCAAGCAGCTGTAGTGGCTGATAGACTATCCAGGGAACCTAAGGCCTCTGTTATATATTCTTCTGACTTGAAACGGGCTTTTGAAACAGCACTGATAGTTGCATCCAAGTGTGGAGGGATCGAGGTTGTCAAGGATTCTGACCTACGGGAGAGACACCTAGGGGATCTTCAAGGCCATGTTTTTCATGAAATAGCAAAAACTAATCCCACAGCTTACAAGGCTTTTGTGTCTAAGAACGAAGATCAAGAAATACCAGGTGGTGGAGAAAGTCTTGTTCAACTTTATGATCGCAGCACATCTGCATTGCTTAAAATTGGCTTAAAGCATAAAGGGGAGCGAGTAATTGTTGTCTCTCATGGAGGATTCATCAGAGCCCTTTACAAGTGGGCATGCCCAAATGGTAAGCCTGGGAAGGTACTCAATACATGTGTTAGTGTTTTTCACTTGTACGGTGAGGACAAATGGACCTTAAAAGTGTGGGGTGATGTCAGTCATCTGAACGAAACTGGATTTCTAGAGTCTGGTTTTGGAGGTGATAGAAATTCTGGTTAGGCCATTGTTTCCTATTTAAGGTAATAAAGGTTTGATTGTTTCCCATCCGAAGTTAATAAAAGATTAGAGAAAGAGCAGAAAATGGATATTAATCAGTGGTGCTAAATATGATTTTGGCCCCTATTTATGTTTTGTATCTTAGCATGCAAATATATGGTCACCATGTAAGGATATGCCTAAACTATTTAATTTTGTGGAGGTGATGTCAATCTCCTTTATAGAATTGTTTCTTTTAAAATCTTTTCGAAGCTTTCATGGAGTGATGAATGTAATGATACACTTTTCATGTTAGTATTTTTAATTTGTATATATCGGTAAGCCTTTTAAACATCCATAGCATGCATGACTACAAACGATAGAAGTTTGAAGGCTCGTC

>Glyma05g10140.4   sequence type=transcript   gene model=Glyma05g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCAGCTTCATTGTTTGACTCTGACTCACTCGCTCGCTCCCTCCCTCAGAAACCATGGCCGAATTTGCCATCAACAACAACAACAACGGTTCCCATTCCAGCCCCCATCCTGATTATGCGGAGATTGTTGTGGTGCGTCATGGCGAAACAGCTTGGAATGCTACTGCAAAAATCCAGGGGCACCTGGATGTTGAATTAAATGAAAATGGAAGACAGCAAGCAGCTGTAGTGGCTGATAGACTATCCAGGGAACCTAAGGCCTCTGTTATATATTCTTCTGACTTGAAACGGGCTTTTGAAACAGCACTGATAGTTGCATCCAAGTGTGGAGGGATCGAGGTTGTCAAGGATTCTGACCTACGGGAGAGACACCTAGGGGATCTTCAAGGCCATGTTTTTCATGAAATAGCAAAAACTAATCCCACAGCTTACAAGGCTTTTGTGTCTAAGAACGAAGATCAAGAAATACCAGGTGGTGGAGAAAGTCTTGTTCAACTTTATGATCGCAGCACATCTGCATTGCTTAAAATTGGCTTAAAGCATAAAGGGGAGCGAGTAATTGTTGTCTCTCATGGAGGATTCATCAGAGCCCTTTACAAGTGGGCATGCCCAAATGGTAAGCCTGGGAAGGTACTCAATACATGTGTTAGTGTTTTTCACTTGTACGGTGAGGACAAATGGACCTTAAAAGTGTGGGGTGATGTCAGTCATCTGAACGAAACTGGATTTCTAGAGTCTGGTTTTGGAGGTGATAGAAATTCTGGTTAGGCCATTGTTTCCTATTTAAGGTAATAAAGGTTTGATTGTTTCCCATCCGAAGTTAATAAAAGATTAGAGAAAGAGCAGAAAATGGATATTAATCAGTGGTGCTAAATATGATTTTGGCCCCTATTTATGTTTTGTATCTTAGCATGCAAATATATGGTCACCATGTAAGGATATGCCTAAACTATTTAATTTTGTGGAGGTGATGTCAATCTCCTTTATAGAATTGTTTCTTTTAAAATCTTTTCGAAGCTTTCATGGAGTGATGAATGTAATGATACACTTTTCATGTTAGTATTTTTAATTTGTATATATCGGTAAGCCTTTTAAACATCCATAGCATGCATGACTACAAACGATAGAAGTTTGAAGGCTCGTC

Coding sequences of Glyma05g10140

Limit To All Plant Sequences

>Glyma05g10140.1   sequence type=CDS   gene model=Glyma05g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGAATTTGCCATCAACAACAACAACAACGGTTCCCATTCCAGCATTAACAGCCCCCATCCTGATTATGCGGAGATTGTTGTGGTGCGTCATGGCGAAACAGCTTGGAATGCTACTGCAAAAATCCAGCCTTGGTATGTTCAAATTTCGCTCATATGTAAACAGGGGCACCTGGATGTTGAATTAAATGAAAATGGAAGACAGCAAGCAGCTGTAGTGGCTGATAGACTATCCAGGGAACCTAAGGCCTCTGTTATATATTCTTCTGACTTGAAACGGGCTTTTGAAACAGCACTGATAGTTGCATCCAAGTGTGGAGGGATCGAGGTTGTCAAGGATTCTGACCTACGGGAGAGACACCTAGGGGATCTTCAAGGCCATGTTTTTCATGAAATAGCAAAAACTAATCCCACAGCTTACAAGGCTTTTGTGTCTAAGAACGAAGATCAAGAAATACCAGGTGGTGGAGAAAGTCTTGTTCAACTTTATGATCGCAGCACATCTGCATTGCTTAAAATTGGCTTAAAGCATAAAGGGGAGCGAGTAATTGTTGTCTCTCATGGAGGATTCATCAGAGCCCTTTACAAGTGGGCATGCCCAAATGGTAAGCCTGGGAAGGTACTCAATACATGTGTTAGTGTTTTTCACTTGTACGGTGAGGACAAATGGACCTTAAAAGTGTGGGGTGATGTCAGTCATCTGAACGAAACTGGATTTCTAGAGTCTGGTTTTGGAGGTGATAGAAATTCTGGTTAG

>Glyma05g10140.2   sequence type=CDS   gene model=Glyma05g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGAATTTGCCATCAACAACAACAACAACGGTTCCCATTCCAGCATTAACAGCCCCCATCCTGATTATGCGGAGATTGTTGTGGTGCGTCATGGCGAAACAGCTTGGAATGCTACTGCAAAAATCCAGGGGCACCTGGATGTTGAATTAAATGAAAATGGAAGACAGCAAGCAGCTGTAGTGGCTGATAGACTATCCAGGGAACCTAAGGCCTCTGTTATATATTCTTCTGACTTGAAACGGGCTTTTGAAACAGCACTGATAGTTGCATCCAAGTGTGGAGGGATCGAGGTTGTCAAGGATTCTGACCTACGGGAGAGACACCTAGGGGATCTTCAAGGCCATGTTTTTCATGAAATAGCAAAAACTAATCCCACAGCTTACAAGGCTTTTGTGTCTAAGAACGAAGATCAAGAAATACCAGGTGGTGGAGAAAGTCTTGTTCAACTTTATGATCGCAGCACATCTGCATTGCTTAAAATTGGCTTAAAGCATAAAGATGTTGTATCTCTTTTCAAAGTCCACTAA

>Glyma05g10140.3   sequence type=CDS   gene model=Glyma05g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGAATTTGCCATCAACAACAACAACAACGGTTCCCATTCCAGCATTAACAGCCCCCATCCTGATTATGCGGAGATTGTTGTGGTGCGTCATGGCGAAACAGCTTGGAATGCTACTGCAAAAATCCAGGGGCACCTGGATGTTGAATTAAATGAAAATGGAAGACAGCAAGCAGCTGTAGTGGCTGATAGACTATCCAGGGAACCTAAGGCCTCTGTTATATATTCTTCTGACTTGAAACGGGCTTTTGAAACAGCACTGATAGTTGCATCCAAGTGTGGAGGGATCGAGGTTGTCAAGGATTCTGACCTACGGGAGAGACACCTAGGGGATCTTCAAGGCCATGTTTTTCATGAAATAGCAAAAACTAATCCCACAGCTTACAAGGCTTTTGTGTCTAAGAACGAAGATCAAGAAATACCAGGTGGTGGAGAAAGTCTTGTTCAACTTTATGATCGCAGCACATCTGCATTGCTTAAAATTGGCTTAAAGCATAAAGGGGAGCGAGTAATTGTTGTCTCTCATGGAGGATTCATCAGAGCCCTTTACAAGTGGGCATGCCCAAATGGTAAGCCTGGGAAGGTACTCAATACATGTGTTAGTGTTTTTCACTTGTACGGTGAGGACAAATGGACCTTAAAAGTGTGGGGTGATGTCAGTCATCTGAACGAAACTGGATTTCTAGAGTCTGGTTTTGGAGGTGATAGAAATTCTGGTTAG

>Glyma05g10140.4   sequence type=CDS   gene model=Glyma05g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGAATTTGCCATCAACAACAACAACAACGGTTCCCATTCCAGCCCCCATCCTGATTATGCGGAGATTGTTGTGGTGCGTCATGGCGAAACAGCTTGGAATGCTACTGCAAAAATCCAGGGGCACCTGGATGTTGAATTAAATGAAAATGGAAGACAGCAAGCAGCTGTAGTGGCTGATAGACTATCCAGGGAACCTAAGGCCTCTGTTATATATTCTTCTGACTTGAAACGGGCTTTTGAAACAGCACTGATAGTTGCATCCAAGTGTGGAGGGATCGAGGTTGTCAAGGATTCTGACCTACGGGAGAGACACCTAGGGGATCTTCAAGGCCATGTTTTTCATGAAATAGCAAAAACTAATCCCACAGCTTACAAGGCTTTTGTGTCTAAGAACGAAGATCAAGAAATACCAGGTGGTGGAGAAAGTCTTGTTCAACTTTATGATCGCAGCACATCTGCATTGCTTAAAATTGGCTTAAAGCATAAAGGGGAGCGAGTAATTGTTGTCTCTCATGGAGGATTCATCAGAGCCCTTTACAAGTGGGCATGCCCAAATGGTAAGCCTGGGAAGGTACTCAATACATGTGTTAGTGTTTTTCACTTGTACGGTGAGGACAAATGGACCTTAAAAGTGTGGGGTGATGTCAGTCATCTGAACGAAACTGGATTTCTAGAGTCTGGTTTTGGAGGTGATAGAAATTCTGGTTAG

Predicted protein sequences of Glyma05g10140

Limit To All Plant Sequences

>Glyma05g10140.1   sequence type=predicted peptide   gene model=Glyma05g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEFAINNNNNGSHSSINSPHPDYAEIVVVRHGETAWNATAKIQPWYVQISLICKQGHLDVELNENGRQQAAVVADRLSREPKASVIYSSDLKRAFETALIVASKCGGIEVVKDSDLRERHLGDLQGHVFHEIAKTNPTAYKAFVSKNEDQEIPGGGESLVQLYDRSTSALLKIGLKHKGERVIVVSHGGFIRALYKWACPNGKPGKVLNTCVSVFHLYGEDKWTLKVWGDVSHLNETGFLESGFGGDRNSG*

>Glyma05g10140.2   sequence type=predicted peptide   gene model=Glyma05g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEFAINNNNNGSHSSINSPHPDYAEIVVVRHGETAWNATAKIQGHLDVELNENGRQQAAVVADRLSREPKASVIYSSDLKRAFETALIVASKCGGIEVVKDSDLRERHLGDLQGHVFHEIAKTNPTAYKAFVSKNEDQEIPGGGESLVQLYDRSTSALLKIGLKHKDVVSLFKVH*

>Glyma05g10140.3   sequence type=predicted peptide   gene model=Glyma05g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEFAINNNNNGSHSSINSPHPDYAEIVVVRHGETAWNATAKIQGHLDVELNENGRQQAAVVADRLSREPKASVIYSSDLKRAFETALIVASKCGGIEVVKDSDLRERHLGDLQGHVFHEIAKTNPTAYKAFVSKNEDQEIPGGGESLVQLYDRSTSALLKIGLKHKGERVIVVSHGGFIRALYKWACPNGKPGKVLNTCVSVFHLYGEDKWTLKVWGDVSHLNETGFLESGFGGDRNSG*

>Glyma05g10140.4   sequence type=predicted peptide   gene model=Glyma05g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEFAINNNNNGSHSSPHPDYAEIVVVRHGETAWNATAKIQGHLDVELNENGRQQAAVVADRLSREPKASVIYSSDLKRAFETALIVASKCGGIEVVKDSDLRERHLGDLQGHVFHEIAKTNPTAYKAFVSKNEDQEIPGGGESLVQLYDRSTSALLKIGLKHKGERVIVVSHGGFIRALYKWACPNGKPGKVLNTCVSVFHLYGEDKWTLKVWGDVSHLNETGFLESGFGGDRNSG*

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