Glyma05g10100 - SoyBase

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Report for Sequence Feature Glyma05g10100

Feature Type:	gene_model
Chromosome:	Gm05
Start:	10132036
stop:	10135785
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g10100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G15790	AT	Annotation by Michelle Graham. TAIR10: peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase \| chr2:6878144-6880743 REVERSE LENGTH=361	SoyBase	E_val: 0	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0010050	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative phase change	SoyBase	N/A	ISS
GO:0010582	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral meristem determinacy	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003755	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity	SoyBase	N/A	ISS
KOG0546	KOG	HSP90 co-chaperone CPR7/Cyclophilin	JGI		ISS
PTHR11071	Panther	CYCLOPHILIN	JGI		ISS
PTHR11071:SF98	Panther		JGI		ISS
PF00160	PFAM	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	JGI		ISS
PF00515	PFAM	Tetratricopeptide repeat	JGI		ISS
UniRef100_G7LGD2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase B n=1 Tax=Medicago truncatula RepID=G7LGD2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K1S1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K1S1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g10100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g10100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g080800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g10100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g10100

Limit To All Plant Sequences

>Glyma05g10100.1   sequence type=CDS   gene model=Glyma05g10100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAACCCTAGATGCTTCCTCGACGTCAGCATCGGCGGCGAGTTAGAAGGCCGGATCGTTGTGGAGCTCTTCCACGACGTCGTTCCCAAAACTGCCGAGAATTTCCGCGCCCTCTGCACCGGCGAAAAGGGCATCGGTCCCAACACCGGCGTCCCCCTCCACTACAAAGGCGTGTGTTTCCACCGCGTGATCAAAGGTTTCATGATCCAGGGCGGCGACATCTCCGCCGGGGACGGAACCGGCGGTGAATCAATCTACGGCGCCAAGTTCGAGGATGAAAACTTGGAGGTGAAGCACGAGAGGAAGGGGATGCTCTCCATGGCCAATGCGGGACCCAACACCAACGGCTCCCAGTTCTTCATCACCACCACCCGCACCCCTCACTTGGACGGAAAGCACGTCGTGTTCGGTAAGGTTCTGAAAGGGATGGGCATCGTTCGTTCCGCGGAACATGTTGTTACCGGGGAAAACGACCGTCCCACTCAGGATGTTGTGATAGTTAATTGTGGGGAAATTGCTGAAGGGGAAGATGATGGAGTTGTTAACTTCTTTAAGGATGGTGACACCTATCCTGATTGGCCCGCTGATCTCGATGTCAAACCCGATGAACTTTCTTGGTGGATGAGTGCCGTGGACGCTATCAAAACCCTTGGGAATGAGCAGTATAAGAAGCAAGATTATAAGATGGCTCTCAGAAAGTATCGAAAAGCTTTGCGCTATTTGGATGTGTGTTGGGAGAAGGAGGACATTGACCAAGAGAATAGCGCTGCCTTAAGGAAGACAAAATCTCAAATCTTTACCAACAGTTCTGCTTGTAAATTGAAATTAGGTGATCTACAAGGAGCTTTACTGGATTCAGACTTTGCGATGCATGATGGAGATAATGCGAAAGCTCTGTTTCGCAAAGGCCAGGCATATATGTTACTCAACGACCTAGATGCTGCTGTTGAAAGTTTCAAGAAAGCGTTAGAGTTGGAGCCGAATGATGGAGGGATTAAAAAAGAGTATGCCACTGCCAGGAGGAAGGTTGCTGATAGACGTGATCTAGAGAAAAAAGCTTATTCTAGAATGTTCAAATAG

Predicted protein sequences of Glyma05g10100

Limit To All Plant Sequences

>Glyma05g10100.1   sequence type=predicted peptide   gene model=Glyma05g10100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVNPRCFLDVSIGGELEGRIVVELFHDVVPKTAENFRALCTGEKGIGPNTGVPLHYKGVCFHRVIKGFMIQGGDISAGDGTGGESIYGAKFEDENLEVKHERKGMLSMANAGPNTNGSQFFITTTRTPHLDGKHVVFGKVLKGMGIVRSAEHVVTGENDRPTQDVVIVNCGEIAEGEDDGVVNFFKDGDTYPDWPADLDVKPDELSWWMSAVDAIKTLGNEQYKKQDYKMALRKYRKALRYLDVCWEKEDIDQENSAALRKTKSQIFTNSSACKLKLGDLQGALLDSDFAMHDGDNAKALFRKGQAYMLLNDLDAAVESFKKALELEPNDGGIKKEYATARRKVADRRDLEKKAYSRMFK*

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