Glyma05g09950 - SoyBase

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Report for Sequence Feature Glyma05g09950

Feature Type:	gene_model
Chromosome:	Gm05
Start:	9919533
stop:	9920363
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g09950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G66870	AT	Annotation by Michelle Graham. TAIR10: ASYMMETRIC LEAVES 2-like 1 \| chr5:26706621-26707562 FORWARD LENGTH=313	SoyBase	E_val: 3.00E-55	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009954	GO-bp	Annotation by Michelle Graham. GO Biological Process: proximal/distal pattern formation	SoyBase	N/A	ISS
GO:0009965	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis	SoyBase	N/A	ISS
GO:0048441	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF03195	PFAM	Protein of unknown function DUF260	JGI		ISS
UniRef100_G7K830	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LOB domain-containing protein n=1 Tax=Medicago truncatula RepID=G7K830_MEDTR	SoyBase	E_val: 1.00E-67	ISS
UniRef100_I1K1R3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1K1R3_SOYBN	SoyBase	E_val: 7.00E-167	ISS

Expression Patterns of Glyma05g09950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g09950

Paralog	Evidence	Comments
Glyma17g20486	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g09950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g081400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g09950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g09950

Limit To All Plant Sequences

>Glyma05g09950.2   sequence type=CDS   gene model=Glyma05g09950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTCGTCCTCGAATTCGCCGTGTGCGGGGTGCAAGCTCCTGCGGCGGAAGTGCACACAGGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAACCCACAGCGGTTCGCGTGCGTGCACCGCGTGTTCGGCGCGAGCAACGTGTCAAAGCTGCTGAGCGAGCTCAGCGTGGCGCAGCGGGACGACGCCGTCAAGTCGCTGGCGTACGAGGCGGAGGCGTGTCTGCGCGACCCCGTCTACGGTTGCGTGGGCTTCATCTCGCTCCTGCAGCAGCACCTCCGTCAAATCCAGACGGAGCTCCACAACGCGAAGAAGGAGTTGGCAAGGTACCCTAGCCCCCAGGCCATGCAGGTTCTTTTAGCCAATCCAGGGATGTTGCAACATGGTGGTATTGTTGTGCCTCATTTACATCAACCAGTGTTCAACGCTCTGTCCAACCAGATGGTTGGACAGAACGTTGGACAGCAGGAGTTTCTAGAAACTCAGCAAATGTTTCTCGCAAATAGGGATCATCAACATCAGCAGCAACAGCAACAACAACATGTTATGCTTCGGAGCTACGAACAGCAAGAGTTTATGAAGTTTAATAATGGTGTGTTTGAGCCTAGTGTTGGTGGAGGGTTTGGGAACCAAGCGGAGGAGTTCTTGTCTCCTTCCTTGGCTCTTGGAAATTTCGAGAATGTTGAGTCTTACCAGATGCAACAGCAAGGGGAACAACATCATCCCATTGAGGCGCAGTTGCTCCTCTCGCCACAGCAAGAGTCACAAGGACAACATCAGCAACAACAGTGTGCAAGTGAGGATGGGAGGAATGTTGTTCCTGCTTGA

Predicted protein sequences of Glyma05g09950

Limit To All Plant Sequences

>Glyma05g09950.2   sequence type=predicted peptide   gene model=Glyma05g09950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSSNSPCAGCKLLRRKCTQECVFAPYFPPDNPQRFACVHRVFGASNVSKLLSELSVAQRDDAVKSLAYEAEACLRDPVYGCVGFISLLQQHLRQIQTELHNAKKELARYPSPQAMQVLLANPGMLQHGGIVVPHLHQPVFNALSNQMVGQNVGQQEFLETQQMFLANRDHQHQQQQQQQHVMLRSYEQQEFMKFNNGVFEPSVGGGFGNQAEEFLSPSLALGNFENVESYQMQQQGEQHHPIEAQLLLSPQQESQGQHQQQQCASEDGRNVVPA*

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