SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G66520 | AT | Annotation by Michelle Graham. TAIR10: formyltransferase, putative | chr1:24816330-24818693 REVERSE LENGTH=355 | SoyBase | E_val: 3.00E-174 | ISS |
| GO:0009058 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biosynthetic process | SoyBase | N/A | ISS |
| GO:0009152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: purine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008864 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: formyltetrahydrofolate deformylase activity | SoyBase | N/A | ISS |
| GO:0016742 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydroxymethyl-, formyl- and related transferase activity | SoyBase | N/A | ISS |
| KOG3082 | KOG | Methionyl-tRNA formyltransferase | JGI | ISS | |
| PTHR11138 | Panther | METHIONYL-TRNA FORMYLTRANSFERASE | JGI | ISS | |
| PF00551 | PFAM | Formyl transferase | JGI | ISS | |
| PF02911 | PFAM | Formyl transferase, C-terminal domain | JGI | ISS | |
| UniRef100_B9SPZ8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Methionyl-tRNA formyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SPZ8_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K1P3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K1P3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g09280 not represented in the dataset |
Glyma05g09280 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g00830 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g001000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g09280.1 sequence type=CDS gene model=Glyma05g09280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCATGTATAGCTATAGTTGTATCTCCACAAGCACAATGATTCGTCGGTTATGGTGTTTACAGAGCGGCTCTCCCTCCGTGCCCCCCTCGAGCACCAAGAAGAAGAAGCCCCTTGTCTTGTTGGGCGCACCTCATGTCTCCGCCATCGTCCTTGAAGCCCTTCTGAACGCTTCTACTTGTCCAGATTCTTCATTTGAGGTTGCGGCTATTGTGACTCAACCTGCTGCCAGAAGGGACAGGGGGAAGAAGCTCTCTCTCTCTCCCTTGGCCTCTCATGCTCTTCAGAGGGGCTTCTCTCCTGATCTCATTTTCTCTCCCCTCCGTGCTGGTGACGATACTTTCTTGTCTAATTTAAAAGCTCTCCAACCTCACTTGTGCATTACCGCAGCCTATGGCAATATATTACCCACCGACTTTCTTCATATTCCATCTTTCGGAACAGTCAATATTCACCCTAGCCTTTTGCCATTGTATCGTGGTGCTGCTCCTGTTCAAAGGGCATTGCAGGATGGTGTTAAAGAAACTGGAGTATCATTAGCATTCACTGTCCGTGCCCTCGATGCTGGACCTGTCATTGCTACTGAAACCATTCAAGTTGATGATCAAATAAAGGCCCCTGATTTGCTTGAGCTCCTGTTTCATAAAGGATCTAAACTTCTGATTGGAGAACTTCCTTCTATACTTGATGGATCAGCAAGAGTAAAGGCACAACCTCAAGACGACTCTAAGGCTACATTGGCTCCAAAGATAAATCCAGATGAATCATGGCTATTCTTTGATCAAGAAGCATCTGTTCTACACAATAAGGTTCGTGCCTTTTCAGGGTGGCCAGGAACTAGAGCAAGAGTGTTAGTGGTTGAGAAAAATGGTCAGCAGAAAACTTTGGAGATTAAAATTATAACCACACGAGTTCGCAGTCATGAAAGTGTGCAGTTCGATGAAGCAGATGACATTGCATTCGTTGAGGGTGCGTTGGTATTTCCATGTGGAAGGGGCACCACACTTGAGGTATTGGAAGTTCAGCTTCCTGGGAAAAAGGTAGTAAACTCAGCTGCTTTCTGGAATGGGCTGCGGGGGCAGAAGCTGAAGAAATTATGA
>Glyma05g09280.1 sequence type=predicted peptide gene model=Glyma05g09280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSMYSYSCISTSTMIRRLWCLQSGSPSVPPSSTKKKKPLVLLGAPHVSAIVLEALLNASTCPDSSFEVAAIVTQPAARRDRGKKLSLSPLASHALQRGFSPDLIFSPLRAGDDTFLSNLKALQPHLCITAAYGNILPTDFLHIPSFGTVNIHPSLLPLYRGAAPVQRALQDGVKETGVSLAFTVRALDAGPVIATETIQVDDQIKAPDLLELLFHKGSKLLIGELPSILDGSARVKAQPQDDSKATLAPKINPDESWLFFDQEASVLHNKVRAFSGWPGTRARVLVVEKNGQQKTLEIKIITTRVRSHESVQFDEADDIAFVEGALVFPCGRGTTLEVLEVQLPGKKVVNSAAFWNGLRGQKLKKL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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