SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G38270 | AT | Annotation by Michelle Graham. TAIR10: galacturonosyltransferase 3 | chr4:17938433-17941410 FORWARD LENGTH=676 | SoyBase | E_val: 0 | ISS |
| GO:0006259 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA metabolic process | SoyBase | N/A | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0008284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009933 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem structural organization | SoyBase | N/A | ISS |
| GO:0010162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed dormancy process | SoyBase | N/A | ISS |
| GO:0010182 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016051 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0019915 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid storage | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0033044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0050826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to freezing | SoyBase | N/A | ISS |
| GO:0051276 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromosome organization | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0047262 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: polygalacturonate 4-alpha-galacturonosyltransferase activity | SoyBase | N/A | ISS |
| PTHR13778 | Panther | GLYCOSYL TRANSFERASE-RELATED | JGI | ISS | |
| PTHR13778:SF2 | Panther | GLYCOSYL TRANSFERASE-RELATED | JGI | ISS | |
| PF01501 | PFAM | Glycosyl transferase family 8 | JGI | ISS | |
| UniRef100_B9T6M7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glycosyltransferase QUASIMODO1, putative n=1 Tax=Ricinus communis RepID=B9T6M7_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K1N5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K1N5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g09200 not represented in the dataset |
Glyma05g09200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g001800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g09200.2 sequence type=CDS gene model=Glyma05g09200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGACTAATCCACTTCCACTGCCACTTATCTTGTTCGTCTTTTCGCTTTTGTTTTCTGCTCTAGATTCTTCAGACTCCAAATCTTCTCCCCTCCTCTATGACTGTGACCAATGCCATCGCACCAAGGAACGCGATGTTTCTACAACTAGAAGCCGCGATGAAAAGGACGTTGGTATAATTGCAACATACAGTGATTCTGCTTCTGGCCATGTTCGACTCGCTAGGTTGAAAATGAGGGATTTATCTGATTCCTGGATTTGGGAAAACCCTACTCATCAATATCAAAAGACCTCCCGGGAATTCATGGAATCATTTCAAACTGAATCCAATCCCAACCACTCCACAGATGAACATTATCCTGAACAAAGCAGAGTTCAAATTCCCCGTTCCTCATCAATGACTATGACGCCCATGAAGATCAAGCGCCGGGTAATGCGGCAAGACAGAAGGAAAGCTCGTGCAGCTGAACTTACTCGGGAAGACAAAGAAAATGACGATCACATTGTATCAGCAGCAATTGAACACACTGAAGGATTTGATACCACTATCAAGGGAAAGTATGGTATATGGAGGAGAGAATATGAGAACCCAAATTCCGATTCAACGCTGAAACTCATGCAAGATCAAATAATAATGGCCAAAGCTTATGCCAACATTGCAAAGTCTAAGAATAAAATTGTTCTATACGAAGCTCTTATCAAGCACTCCAGAGATAGTCAACAAGCTATAGGAGAAGCCAGTTCTGATACCGAGCTTCACCTTGGAGCACTTGATCGAGCAAAAGCTATGGGTCATGTTCTTTCCATAGCAAAGGACCAACTTTATGACTGCCTTTTGGTGTCAAGGAAGTTAAGGGCAATGCTTCAATCAACTGAAGATAAAGTGAATATACAGAAGAAAAGAAGTGCATTCTTGATTCAGCTGGCTGCAAAAACTGTGCCTAGACCATTGCATTGCCTTCCCCTGCAACTTGCAGCGAATTATTACCTGCAGGGTTATCATAAGAAAGGAAATCTTGACAAAGAAAAGATTGAAGATCCATCTCTTTATCATTATGCCATCTTCTCTGATAATGTACTGGCTGCATCTGTGGTTGTTAATTCTACTGTACAGAATGCAAAGGAACCTGAGAAGCATGTTTTCCATATAGTGACGGATAAATTGAATTTTGCAGCTATGAGAATGTGGTTTCTCATCAACCCTCCTTCTAAAGCAACCATTGAAGTTCAGAATGTTGATGATTTCAAGTGGCTGAATTCCTCATATTGTTCTGTTCTACGTCAGCTTGAATCGGCAAGAATCAAGGAATATTACTTTAAGGCTAATCATCCTTCTTCCCTCTCTGTTGGTTCTGACAATCTAAAATATAGAAATCCTAAATATTTGTCAATGCTAAATCACTTAAGGTTCTACCTTCCTGAAGTTTATCCAAAATTAAACAGAATTCTATTCTTGGATGATGACATTGTAGTGCAGAGAGATTTGACACCTCTTTGGTCAATTGATTTGAAAGGTATGGTGAATGGTGCCGTGGAGACATGCAAGGAGAGTTTCCATAGGTTTGATAAATACCTAAACTTTAGTAATCCACTGATTTCCAACAACTTCAGTCCTGAGGCGTGTGGCTGGGCATTTGGCATGAATATGTTTGACTTGAAGGAGTGGAAGAAACGAAACATCACTGGTATCTATCATCGGTGGCAAGATATGAATGAGGATAGAACCCTCTGGAAGCTTGGAACCTTACCCCCAGGACTAATCACCTTTTATAATCTGACCTATCCGTTAGATCGAGGCTGGCATGTTTTGGGACTTGGCTATGACCCGGCTCTGAACCTAACAGAGATAGAGAATGGCGCTGTCATTCACTACAATGGAAACTACAAGCCATGGTTGAATCTTGCTGTTTCCAAATATAAATCGTACTGGTCCAGATATGTTATGTTCGATAATCCATATCTTCGAGTTTGCAACCTTAGCGAATAG
>Glyma05g09200.2 sequence type=predicted peptide gene model=Glyma05g09200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high METNPLPLPLILFVFSLLFSALDSSDSKSSPLLYDCDQCHRTKERDVSTTRSRDEKDVGIIATYSDSASGHVRLARLKMRDLSDSWIWENPTHQYQKTSREFMESFQTESNPNHSTDEHYPEQSRVQIPRSSSMTMTPMKIKRRVMRQDRRKARAAELTREDKENDDHIVSAAIEHTEGFDTTIKGKYGIWRREYENPNSDSTLKLMQDQIIMAKAYANIAKSKNKIVLYEALIKHSRDSQQAIGEASSDTELHLGALDRAKAMGHVLSIAKDQLYDCLLVSRKLRAMLQSTEDKVNIQKKRSAFLIQLAAKTVPRPLHCLPLQLAANYYLQGYHKKGNLDKEKIEDPSLYHYAIFSDNVLAASVVVNSTVQNAKEPEKHVFHIVTDKLNFAAMRMWFLINPPSKATIEVQNVDDFKWLNSSYCSVLRQLESARIKEYYFKANHPSSLSVGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLNRILFLDDDIVVQRDLTPLWSIDLKGMVNGAVETCKESFHRFDKYLNFSNPLISNNFSPEACGWAFGMNMFDLKEWKKRNITGIYHRWQDMNEDRTLWKLGTLPPGLITFYNLTYPLDRGWHVLGLGYDPALNLTEIENGAVIHYNGNYKPWLNLAVSKYKSYWSRYVMFDNPYLRVCNLSE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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