Glyma05g09170 - SoyBase

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Report for Sequence Feature Glyma05g09170

Feature Type:	gene_model
Chromosome:	Gm05
Start:	8950179
stop:	8957086
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g09170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G16210	AT	Annotation by Michelle Graham. TAIR10: HEAT repeat-containing protein \| chr5:5290999-5297779 REVERSE LENGTH=1180	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
KOG0211	KOG	Protein phosphatase 2A regulatory subunit A and related proteins	JGI		ISS
UniRef100_Q8VYW7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT5g16210/T21H19_130 n=2 Tax=Arabidopsis thaliana RepID=Q8VYW7_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A89A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A89A related cluster n=1 Tax=unknown RepID=UPI000233A89A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g09170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g09170

Paralog	Evidence	Comments
Glyma19g00738	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g09170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g002100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g09170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g09170

Limit To All Plant Sequences

>Glyma05g09170.1   sequence type=CDS   gene model=Glyma05g09170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTGGAGCGTTCGTCGCTGTGTAACTGCGTGGTGAACTTTTTGTTGGAAGAGAACTACCTTCTCACCGCCTTCGAGCTTCTCCACGAGCTTCTGGACGATGGCCGCCACGACCAGGCCATTCGCCTCCAACAGTACTTCTCCGACCCCGCCCGCTTCCCTCCCAACCAAATCTCCCGCCTCAACTCTCTCCCCACTGCCGATCCACAAACTCTCCTCCAACTCAAGAACGAATCCGACCACAAGTTGTCCATCACCGATTACGAACTGCGCCTCGCCAACGAAGACATTGCCAAACTCAAATCTCAACTCTATGCTGCTGAAGCTCCTCAGTCTAATAGTGGACATGTTTCCGAGGGACAAATTCAGGAACAAAAACCCAATCATAACAATAATCATTCTTCCTCCTTCACTGCTTCCTCTTTGGGACCGCTAAAGGATACAGAACGTCGAGATCTTAATTGTGCTGTCAAAGAATATTTGCTTATTGCTGGCTACCGTCTTACTGCAATGACTTTTTATGAAGAGGTTACAGACCAGAACTTGGACAATTGGCAGAATACAAGTGCATTAATGCCGCAAGCCTTGCGTCATTATTATTATCAGTATCTTTTATCAACTTCAGAGGTTGCTGAGGAAAAAATTGCCCAAGTTCCAGAAAATATAACACTGCTGAAAGAAAATGAGAGGCTGAATCAAGAAAAGGAGAGCTTGTTGAAGGACAAAGATTTGGCCGATGGTCAAATAGCAGCATTAACTAAATCCTTGGAGGCACTGCAGAGAGATCTTAAAGAAAAAGAGAACATGGTGCAAGTTTTAAAGCAGTCCTTGGAGAATCAAAGAAAAGGGCTCCACGCTAGCAGAGTTGAGATCAGTAAGCTGAAAATGAGTATTGAAGGGTCTGGTTCTGGAAATAGTCTAGTTGTTAGTGATGTTGACAATTTTCAACCTGTGTCTTTAGATGAGTACAAGGAAGAAATTAAGAAATTGCAAATGGAAGTTGAACGGTTGAAGGAAAAGAATATAGGAATTCCTGAACCAGGAAATTTTGTTGGTTCTGAAAATGAAACTCTGCAGATAGAAGACAAAGTGCGAGAGATTCATGAGGATCAAGGTGCAATTTCTTACCATGTTGATGCACCACAAGATGTCATACGCGATGAAGATGCTCAATCAACAACTTCTCAAACTCTTAACAAATATACTGATAAACACGAAGATGCACTGCATGCATTATTTAATCCAGCAAATGGAAATAGTGCTTTTGAAAATATTGATAATGTCTCTGAACAAAATGTTGGCAAGCAAGAAGGGGATAACAGGTTAAATGCAAAATCAGACAGTGCAAATGATGAAGCAATATCCGAGAAGATGGGGTTAGGAACCATTCAGATACTTGCAGACGCTTTGCCTAAAATTGTTCCGTATGTCCTCATCAATCATCGTGAGGAACTGCTTCCTCTAATGATGTGTGCAATTGAGCACCACCCGGATAGCAGCACTCGGGATTCTTTGACCCATACATTATTTAATTTAATCAAGCGTCCTGATGAACAACAGAGACGCATAATAATGGATGCATGTGTCAGCCTTGCAAAGAATGTTGGAGAAATGAGAACAGAAACAGAATTGCTTCCTCAATGTTGGGAACAAATAAATCACATGTACGAGGAGCGTAGACTACTTGTTGCTCAATCATGTGGAGAACTTGCAGAATTTGTACGGCCAGAGATTCGGGATTCTCTTATTTTATCTATTGTGCAGCAACTAATAGAAGATTCTGCCACTATTGTTCGAGAGGCCGCAGCTCATAATTTGGCTATGCTGCTTCCACTTTTTCAAAACATGGATAAATATTTCAAGGTGGAGGAGTTGATGTTCCAATTGATATGTGATCCCTCAGGAGTGGTGGTTGAAACTACTCTCAAGGAATTGGTTCTTGCAATTATAAAGTGGGGAAACAAATTAGACCACATTTTGGGAGTTTTATTCTCACATATTTTGAGCTCTGCTCAGCATTGTCCACCTCTTTCTGTAATTGAAGGGTGTATAGAGTCACATCTACATGAATTGGGTGAAAGAGAGCGCTGGAATATAGATGTTCTATTGAGAATGCTGATGGAATTGCTTCCTTTGGTGCACCAGAAAGCAATTGAGACATGTCCTTTCTTGTCCAGAGTAGAATCTACACAAGTTGTGTTTTCTGCCACATTGTTTGAATTGTATGCAAGGGGACATGTTGAATGGGATGCATTTGAATGGATGCATGTTGAGTGCTTTCCTAAATTGATACAGCTGGCTTGCTTGTTACCATGGAAAGAAGATAATCTACGGAGCCGAATTTCAAAGTTTCTGTTATCTGTTTCTGAAAGGTTTGGAGATTCCTATACGACATGCATCATGCTACCTGTATTTTTAACAGCAGTTGGAGATGATGCTGATTTGACATTTTTTCCTAGTGCCATACATTCAAAAATTAAAGGTTTGAGACCAAAATCTGTTCTTTCGGAGAAGCTCTCTATATTGTGTGTCCTACCGCTTCTGTTGGCTGGTGTTTTGGGTGCTTCTGGAAAACGTAATCAATTAGAAGATTACTCAAGAAAGCTGTTAGTAGAAGACAGTTTGAAGGAGAATCTGGCAACAAAGCACACTGTAGAGATCATTAATGCTGTCCGCTTCATTTGCATATATGAAGAAAATCATGGTATGATATTTAATATACTGTGGGAAATGGTTGTTAGCTCTAACGTGAACATGAAAATAAGTGCTGCCAAGCTTCTAAAAGCTATTGTGCCATATATTGATGCAAAGCTTACTTCAACTCATGCTTTGCCTGCTCTAATTACTCTTGGATCTGACCAAAACCTCAATGTGAAGTGTGCCAGCATTGATGCATTTGGTGTAGTGGCTCAACGCTTTAAAAATGAGATGATAGTTGACAAGATACGTGTTCAAATGGGTGCTTTTCTTGAAGATGGATCCCATGAAGCTACTATTGCTGTCATTCGTGCATTGGTGGTTGCAATTTCTCAACTTACAGCCGTGCCTACTGCTGCTTCTAGTGATTTGATGCTTCGGCAAGAAAGAGCCAATGCATTTTGTGAGGCAATCCGGGCTTTGGATGCTACAGATCTTCCTGCAAATAGTGTTCGGGATTACCTCCTGCCAGCTATACAGAACCTATTAAAAGATTTGGATGCACTGGATCCAGCACACAAAGAAGCCATTGAAATCATCATGAAGGAAAGATCTGGGGCAAGTGTTGGTGGTGGTGCAAGCAAGTCGATGGCTTCTCATCTTGGGATTGCATCATCAGTGAGCAACTTCTTTGGTGATGGTGGCTTGCTTGGAAAGAAAGACAGCACAGAAGCACAGCCACAGCCAGAGAGAGTTGTATACCCCAACAAGGCTGCTGCTACATCACAACCACAACCAGAGGACACTAGATTAAAGCGCATCATGCTGGGACATTTCAGCGACATACTTAGGACCAAGGGAAAATCCCAAGACGAATAA

Predicted protein sequences of Glyma05g09170

Limit To All Plant Sequences

>Glyma05g09170.1   sequence type=predicted peptide   gene model=Glyma05g09170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVERSSLCNCVVNFLLEENYLLTAFELLHELLDDGRHDQAIRLQQYFSDPARFPPNQISRLNSLPTADPQTLLQLKNESDHKLSITDYELRLANEDIAKLKSQLYAAEAPQSNSGHVSEGQIQEQKPNHNNNHSSSFTASSLGPLKDTERRDLNCAVKEYLLIAGYRLTAMTFYEEVTDQNLDNWQNTSALMPQALRHYYYQYLLSTSEVAEEKIAQVPENITLLKENERLNQEKESLLKDKDLADGQIAALTKSLEALQRDLKEKENMVQVLKQSLENQRKGLHASRVEISKLKMSIEGSGSGNSLVVSDVDNFQPVSLDEYKEEIKKLQMEVERLKEKNIGIPEPGNFVGSENETLQIEDKVREIHEDQGAISYHVDAPQDVIRDEDAQSTTSQTLNKYTDKHEDALHALFNPANGNSAFENIDNVSEQNVGKQEGDNRLNAKSDSANDEAISEKMGLGTIQILADALPKIVPYVLINHREELLPLMMCAIEHHPDSSTRDSLTHTLFNLIKRPDEQQRRIIMDACVSLAKNVGEMRTETELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLIEDSATIVREAAAHNLAMLLPLFQNMDKYFKVEELMFQLICDPSGVVVETTLKELVLAIIKWGNKLDHILGVLFSHILSSAQHCPPLSVIEGCIESHLHELGERERWNIDVLLRMLMELLPLVHQKAIETCPFLSRVESTQVVFSATLFELYARGHVEWDAFEWMHVECFPKLIQLACLLPWKEDNLRSRISKFLLSVSERFGDSYTTCIMLPVFLTAVGDDADLTFFPSAIHSKIKGLRPKSVLSEKLSILCVLPLLLAGVLGASGKRNQLEDYSRKLLVEDSLKENLATKHTVEIINAVRFICIYEENHGMIFNILWEMVVSSNVNMKISAAKLLKAIVPYIDAKLTSTHALPALITLGSDQNLNVKCASIDAFGVVAQRFKNEMIVDKIRVQMGAFLEDGSHEATIAVIRALVVAISQLTAVPTAASSDLMLRQERANAFCEAIRALDATDLPANSVRDYLLPAIQNLLKDLDALDPAHKEAIEIIMKERSGASVGGGASKSMASHLGIASSVSNFFGDGGLLGKKDSTEAQPQPERVVYPNKAAATSQPQPEDTRLKRIMLGHFSDILRTKGKSQDE*

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