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Report for Sequence Feature Glyma05g09130

Feature Type:gene_model
Chromosome:Gm05
Start:8932590
stop:8935817
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G01640AT Annotation by Michelle Graham. TAIR10: glucuronokinase G | chr3:239418-241198 FORWARD LENGTH=362 SoyBaseE_val: 0ISS
GO:0006020GO-bp Annotation by Michelle Graham. GO Biological Process: inositol metabolic process SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0042546GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis SoyBaseN/AISS
GO:0048868GO-bp Annotation by Michelle Graham. GO Biological Process: pollen tube development SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008266GO-mf Annotation by Michelle Graham. GO Molecular Function: poly(U) RNA binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016773GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor SoyBaseN/AISS
GO:0047940GO-mf Annotation by Michelle Graham. GO Molecular Function: glucuronokinase activity SoyBaseN/AISS
PF00288PFAM GHMP kinases N terminal domain JGI ISS
PF08544PFAM GHMP kinases C terminal JGI ISS
UniRef100_B9S667UniRef Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9S667_RICCO SoyBaseE_val: 0ISS
UniRef100_I1K1M4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K1M4_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma19g00661 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g002500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma05g09130.1   sequence type=CDS   gene model=Glyma05g09130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCATTGATAGTGAATACGTGATATCTCACAAGGCCTATGCGAGGGTGGGATTGCTTGGGAACCCGAGCGATGTCTACTACGGCAAAACGATAGCGTTAAGCGTCGCCAACTTCTTCGCCACCGTCACGCTGCGTCCCTCCGACCAGTTAATCCTCCAACCCCACCCCCTCCACGATCTCCTTCATTTCTCATCGCTCCCTCAATTGGTCAACAGGTTGAGCTCCCAAGGTTACTATGGAGGCGTGCGATTGCTTATGGCTATTTGCAATGTCTTCTACGCGTATTGCAGAGAGAACGCCATCGATCTTGGCGACGACAATTTCACTCTCTCCTACGACACCAATATCCCTCGCCAGGCTGGTCTTTCGGGTTCTAGCGGGATCGTGTGTGCTGCGTTGAACTGTTTGTTGGATTTCTACAACGTCAGGCATCTGGTCAAGGTGGAGGTCAGGCCTAACCTCATCCTCGCTGCCGAGAAAGAACTCGGGATTGTGGCCGGTCTTCAGGATCGGGTCGCACAAGTTTACGGTGGCCTTGTTTACATGGACTTTAGCAAGGAAAACATGAATGAGCTGGGCCATGGAGTTTATGTACCAGTGGATTTGAGTCTCCTCCCTCCTCTGTATCTCATCTATGCGGAAAATCCTAGTGATTCTGGCAAGGTTCATAGTAAAGTACGGCAGAGGTGGCTTGATGGTGATGAGTTCATTGTGTCTTCCATGCTTGAAATTGCTAATATCGCCCAAGAAGGAAAGACTGCATTAGAAGAAAAGGACTACTCCAAATTTGCAGCTCTCATGAATCGAAATTTTGACCTGCGAAGGTTAATGTTTGGAGATGATGCCCTCGGTGATTTGAACCTAAAAATGGTAGAGGTTGCCAGAAAGGTTGGAGCTGCGTCAAAATTTACCGGTAGCGGAGGAGCTGTTGTTGCATTTTGTCCTGAGGGGACTTCTCAAGTGAAGCTTCTCGAGGACGAATGTCAAAAAGAAGGATTTGTGATACTACCTATTGAACCTCTTCCTTCTCGTCTAAATGAAATTGACTTGAAAACCTTGCAAATAAAGTAA

>Glyma05g09130.1   sequence type=predicted peptide   gene model=Glyma05g09130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGIDSEYVISHKAYARVGLLGNPSDVYYGKTIALSVANFFATVTLRPSDQLILQPHPLHDLLHFSSLPQLVNRLSSQGYYGGVRLLMAICNVFYAYCRENAIDLGDDNFTLSYDTNIPRQAGLSGSSGIVCAALNCLLDFYNVRHLVKVEVRPNLILAAEKELGIVAGLQDRVAQVYGGLVYMDFSKENMNELGHGVYVPVDLSLLPPLYLIYAENPSDSGKVHSKVRQRWLDGDEFIVSSMLEIANIAQEGKTALEEKDYSKFAALMNRNFDLRRLMFGDDALGDLNLKMVEVARKVGAASKFTGSGGAVVAFCPEGTSQVKLLEDECQKEGFVILPIEPLPSRLNEIDLKTLQIK*







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