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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G14510 | AT | Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr5:4678125-4679194 REVERSE LENGTH=327 | SoyBase | E_val: 8.00E-115 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0010014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem initiation | SoyBase | N/A | ISS |
| GO:0010089 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem development | SoyBase | N/A | ISS |
| GO:0010413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process | SoyBase | N/A | ISS |
| GO:0045492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process | SoyBase | N/A | ISS |
| GO:0005871 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: kinesin complex | SoyBase | N/A | ISS |
| GO:0019894 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinesin binding | SoyBase | N/A | ISS |
| PTHR23315 | Panther | BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING | JGI | ISS | |
| PTHR23315:SF39 | Panther | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN | JGI | ISS | |
| PF05804 | PFAM | Kinesin-associated protein (KAP) | JGI | ISS | |
| UniRef100_B9S654 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9S654_RICCO | SoyBase | E_val: 5.00E-134 | ISS |
| UniRef100_I1K1L7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K1L7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g09050 not represented in the dataset |
Glyma05g09050 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g003300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g09050.1 sequence type=CDS gene model=Glyma05g09050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAAAAGAGGTTGTGGAAAACCTTTGGAACGGTGATAGAGATTCTCAAATTCAAGCAGCTTTGGAACTGGGTAGATTAAGCAGGAAGCAGAGGCACAAGTTGGAAGAGAGTGGTGTTATGGTTCCTCTTGTTTCCATGCTTCATTCTCAAGACTATGAAGCCATAGAAGCTGCTTTGTGTGCCTTGCTCAGCCTTTCCTTTGGCAGTGAAAGAAATAAGATTCGGATCATCAAATCTGGAGCTTTGCCAGTTCTGGTGAGTCTCCTCTATTGTCATAGCCAGACAGTGATCATACAATTGACATTAGCAGCCATGCTAACCCTCTCTTCTTGCAAGGCAAATAAGGTAGCAATTGCTTCATCTGGGGCTATCCAACTCTTGGCTGAATTTGTCAACAGCAATTGTAGCACTCAGTCTCAGCTTGATGCTATAGCTACTCTACACAACCTCACAACCTGCAAAGAGATTATGCCATTGATTGTCTCTTCTGGTGTTATGTTCTCCTTGCTTGAACTGATCCACAGCACAGTAAAATCATCTCCATTGGTTGAGAAAGCAATTGAGTTGCTAGAGAACATTGTGTCTTCATCAGAGAGTGCACTTTGTAAGGCTGCTGGTGCTGGTGGAGCGATCGGGATACTAGTCGAGACTATTGAAGATGGATCTTTACTAAGCAAAGAGCATGCAGTGAGTATACTTTTACTTATATGCCAGAGCTGCAGAGAGAAATATAGAGGGTTGATTTTGACAGAGGGAGTGATGCCAGGATTGCTTCAGTTAAGTGTGGATGGAACATGGAGAGCCAAATCCATCGCTCAAGAACTGTTGTTGCTTCTGAGGGACTGCTCCAATTATGGCTCAAGATGTAAACAAATCAATCATGAGCTTATAGAACGGATAATGGAAGAAATTGAAGCAGAAGGAGAGAAATTGGCAGATACTACTTTAAGGTTGGTAGAGGAAATGATTGCAAAGCTCAATGCTTAA
>Glyma05g09050.1 sequence type=predicted peptide gene model=Glyma05g09050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEKEVVENLWNGDRDSQIQAALELGRLSRKQRHKLEESGVMVPLVSMLHSQDYEAIEAALCALLSLSFGSERNKIRIIKSGALPVLVSLLYCHSQTVIIQLTLAAMLTLSSCKANKVAIASSGAIQLLAEFVNSNCSTQSQLDAIATLHNLTTCKEIMPLIVSSGVMFSLLELIHSTVKSSPLVEKAIELLENIVSSSESALCKAAGAGGAIGILVETIEDGSLLSKEHAVSILLLICQSCREKYRGLILTEGVMPGLLQLSVDGTWRAKSIAQELLLLLRDCSNYGSRCKQINHELIERIMEEIEAEGEKLADTTLRLVEEMIAKLNA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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