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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G11010 | AT | Annotation by Michelle Graham. TAIR10: Pre-mRNA cleavage complex II protein family | chr5:3484176-3486067 FORWARD LENGTH=368 | SoyBase | E_val: 3.00E-173 | ISS |
| GO:0006777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Mo-molybdopterin cofactor biosynthetic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| PTHR12755 | Panther | CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P | JGI | ISS | |
| PF03205 | PFAM | Molybdopterin guanine dinucleotide synthesis protein B | JGI | ISS | |
| PF06807 | PFAM | Pre-mRNA cleavage complex II protein Clp1 | JGI | ISS | |
| UniRef100_I1K1J8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K1J8_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q8VYP6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Polynucleotide 5'-hydroxyl-kinase NOL9 n=1 Tax=Arabidopsis thaliana RepID=NOL9_ARATH | SoyBase | E_val: 2.00E-170 | ISS |
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Glyma05g08830 not represented in the dataset |
Glyma05g08830 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g00341 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g004700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g08830.4 sequence type=transcript gene model=Glyma05g08830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTGTAACACGTGTGATCTGGAATCAAAAGCCCTAAAAACCCCTCCCTCTGATACTTGTCCTATTCATAATAGAACGTTGACAGTGCCATTCTCCGACGACAGTGCCTTCAGCTGTCATTAAGTTCTCGCACGGCACAGAGAGAAAGAGATGGATTCTTCTCCTTCACCAGACATATACATCCCAGAGCAATGGTCAGAGGCTGCAGAGTCCATTGCACACAGTTCAATGCCTCCTATTGCTCTTATATGTGGTGCCAAGAATTGTGGGAAGACAACCTTCTCCCGCTATCTCCTAAATGTCCTCTTGCACAAATACACCAAAGTAGCTTATCTGGATACTGATGTTGGCCAACCTGAATTTACTCCTCCAGCTTTTCTTTCACTAACCATTGTTCATAAAGTAACTCCAGATTTGACAGTTCCATGCCTGAAAACACCAGAGAGGTGCCTTTTCTTTGGTGATGTTTCTTCTAAGAGAGATCCATCAACATACTTAAGTTATGTATTTGCCATATATGATTATTACCAAAAGAAGTATTGCATCTATGAAAAGGGAGAAAATCCTTGTAAGGTTAAGTTGCCTCTTATTGTGAATACTCCTGGCTGGGTGAAAGGTGTTGGTTACGATGTATTAGTGGACATGTTGAAATATATTTCTCCAACACATGTAGTTAAGATAAGCATAGCCAGTGAAAAGAAGAATCTACCTGCTGGAGAATTCTGGTTAGATGGAGAACACGATGAAACAATTAACCTAATTGAGATAAATTCTGCTCATCAGGACTCATTAAATAGATCGTTGCTTGTTCAGAAGGATGCACGTCTCCTACGTGATCTACGAATAATGGCTTATTTCAAACAGTGCTTTTCTAGTGATTCAAATATTTCTACAATCAAGGAACTTGCTCATGCCTTGGCCTCTCACTGTCCTTATGAAGTTCCCATTGCAAGCATAAAGATTCGACATCTTCATTGTGAGGTCCCAAGCTCCGAAATATTCTTCAGTTTGAATGCTACCATTGTTGGCTTAGCTGTTGATTCTGAAGGACCTGAAAATTTACCTTGGTGTCTTGGTCTTGGGATTGTGAGGGGAATTGACACAGTCAAAGGTGTGCTTTATGTCATTACTCCTGTACCACATAATTCTCTCGAAAAAGTCAACGTCTTGCTACAGGGTTATATCCAAATTCCATCTTGTTTATTGCAGGTTCAGGGATGCATCTCACCTTACATGTCAGCAAATACTTTGACTTTGACTTCAAACTAGTTATTCATGTGTTGGCAAAGAGAACCATTATAGTAACATATTAACAGGGTAATAGCCACCATTCCCTTCACGGGTTAGAAGCATCGTTCCATGGAAGGACATATATTGTAATTTACATATGCCCCAGAGCATTTTTTTTTTCTCTGTTCTTGAAAATCCAATTCTGTTTTCGGTTATTTATATTCAGTTACTATTACTTGCGGTATGTCTAATTCCTTTCAAGCTTGGGAATGTGATGGCCAAGTCTGACAAATGTCATTTAAAGAATATGACCCTTGATTTAAGGTTCTTTGCATAGAACAATGGATGGATTTTTCAAGTTTCCAGTGTTGAATGAAATGATACAAATAATTATTATTTTTAAGCAGGAAAACAATTTTTTTTTCTGTTAAATGGAAATT
>Glyma05g08830.3 sequence type=CDS gene model=Glyma05g08830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTCTTCTCCTTCACCAGACATATACATCCCAGAGCAATGGTCAGAGGCTGCAGAGTCCATTGCACACAGTTCAATGCCTCCTATTGCTCTTATATGTGGTGCCAAGAATTGTGGGAAGACAACCTTCTCCCGCTATCTCCTAAATGTCCTCTTGCACAAATACACCAAAGTAGCTTATCTGGATACTGATGTTGGCCAACCTGAATTTACTCCTCCAGCTTTTCTTTCACTAACCATTGTTCATAAAGTAACTCCAGATTTGACAGTTCCATGCCTGAAAACACCAGAGAGGTGCCTTTTCTTTGGTGATGTTTCTTCTAAGAGAGATCCATCAACATACTTAAGTTATGTATTTGCCATATATGATTATTACCAAAAGAAGTATTGCATCTATGAAAAGGGAGAAAATCCTTGTAAGGTTAAGTTGCCTCTTATTGTGAATACTCCTGGCTGGGTGAAAGGTGTTGGTTACGATGTATTAGTGGACATGTTGAAATATATTTCTCCAACACATGTAGTTAAGATAAGCATAGCCAGTGAAAAGAAGAATCTACCTGCTGGAGAATTCTGGTTAGATGGAGAACACGATGAAACAATTAACCTAATTGAGATAAATTCTGCTCATCAGGACTCATTAAATAGATCGTTGCTTGTTCAGAAGGATGCACGTCTCCTACGTGATCTACGAATAATGGCTTATTTCAAACAGTGCTTTTCTAGTGATTCAAATATTTCTACAATCAAGGAACTTGCTCATGCCTTGGCCTCTCACTGTCCTTATGAAGTTCCCATTGCAAGCATAAAGATTCGACATCTTCATTGTGAGGTCCCAAGCTCCGAAATATTCTTCAGTTTGAATGCTACCATTGTTGGCTTAGCTGTTGATTCTGAAGGACCTGAAAATTTACCTTGGTGTCTTGGTCTTGGGATTGTGAGGGGAATTGACACAGTCAAAGGTGTGCTTTATGTCATTACTCCTGTACCACATAATTCTCTCGAAAAAGTCAACGTCTTGCTACAGGGTTATATCCAAATTCCATCTTGTTTATTGCAGGTTCAGGGATGCATCTCACCTTACATGTCAGCAAATACTTTGACTTTGACTTCAAACTAG >Glyma05g08830.4 sequence type=CDS gene model=Glyma05g08830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTCTTCTCCTTCACCAGACATATACATCCCAGAGCAATGGTCAGAGGCTGCAGAGTCCATTGCACACAGTTCAATGCCTCCTATTGCTCTTATATGTGGTGCCAAGAATTGTGGGAAGACAACCTTCTCCCGCTATCTCCTAAATGTCCTCTTGCACAAATACACCAAAGTAGCTTATCTGGATACTGATGTTGGCCAACCTGAATTTACTCCTCCAGCTTTTCTTTCACTAACCATTGTTCATAAAGTAACTCCAGATTTGACAGTTCCATGCCTGAAAACACCAGAGAGGTGCCTTTTCTTTGGTGATGTTTCTTCTAAGAGAGATCCATCAACATACTTAAGTTATGTATTTGCCATATATGATTATTACCAAAAGAAGTATTGCATCTATGAAAAGGGAGAAAATCCTTGTAAGGTTAAGTTGCCTCTTATTGTGAATACTCCTGGCTGGGTGAAAGGTGTTGGTTACGATGTATTAGTGGACATGTTGAAATATATTTCTCCAACACATGTAGTTAAGATAAGCATAGCCAGTGAAAAGAAGAATCTACCTGCTGGAGAATTCTGGTTAGATGGAGAACACGATGAAACAATTAACCTAATTGAGATAAATTCTGCTCATCAGGACTCATTAAATAGATCGTTGCTTGTTCAGAAGGATGCACGTCTCCTACGTGATCTACGAATAATGGCTTATTTCAAACAGTGCTTTTCTAGTGATTCAAATATTTCTACAATCAAGGAACTTGCTCATGCCTTGGCCTCTCACTGTCCTTATGAAGTTCCCATTGCAAGCATAAAGATTCGACATCTTCATTGTGAGGTCCCAAGCTCCGAAATATTCTTCAGTTTGAATGCTACCATTGTTGGCTTAGCTGTTGATTCTGAAGGACCTGAAAATTTACCTTGGTGTCTTGGTCTTGGGATTGTGAGGGGAATTGACACAGTCAAAGGTGTGCTTTATGTCATTACTCCTGTACCACATAATTCTCTCGAAAAAGTCAACGTCTTGCTACAGGGTTATATCCAAATTCCATCTTGTTTATTGCAGGTTCAGGGATGCATCTCACCTTACATGTCAGCAAATACTTTGACTTTGACTTCAAACTAG
>Glyma05g08830.3 sequence type=predicted peptide gene model=Glyma05g08830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSSPSPDIYIPEQWSEAAESIAHSSMPPIALICGAKNCGKTTFSRYLLNVLLHKYTKVAYLDTDVGQPEFTPPAFLSLTIVHKVTPDLTVPCLKTPERCLFFGDVSSKRDPSTYLSYVFAIYDYYQKKYCIYEKGENPCKVKLPLIVNTPGWVKGVGYDVLVDMLKYISPTHVVKISIASEKKNLPAGEFWLDGEHDETINLIEINSAHQDSLNRSLLVQKDARLLRDLRIMAYFKQCFSSDSNISTIKELAHALASHCPYEVPIASIKIRHLHCEVPSSEIFFSLNATIVGLAVDSEGPENLPWCLGLGIVRGIDTVKGVLYVITPVPHNSLEKVNVLLQGYIQIPSCLLQVQGCISPYMSANTLTLTSN* >Glyma05g08830.4 sequence type=predicted peptide gene model=Glyma05g08830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSSPSPDIYIPEQWSEAAESIAHSSMPPIALICGAKNCGKTTFSRYLLNVLLHKYTKVAYLDTDVGQPEFTPPAFLSLTIVHKVTPDLTVPCLKTPERCLFFGDVSSKRDPSTYLSYVFAIYDYYQKKYCIYEKGENPCKVKLPLIVNTPGWVKGVGYDVLVDMLKYISPTHVVKISIASEKKNLPAGEFWLDGEHDETINLIEINSAHQDSLNRSLLVQKDARLLRDLRIMAYFKQCFSSDSNISTIKELAHALASHCPYEVPIASIKIRHLHCEVPSSEIFFSLNATIVGLAVDSEGPENLPWCLGLGIVRGIDTVKGVLYVITPVPHNSLEKVNVLLQGYIQIPSCLLQVQGCISPYMSANTLTLTSN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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