SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G40440 | AT | Annotation by Michelle Graham. TAIR10: mitogen-activated protein kinase kinase 3 | chr5:16182149-16184513 FORWARD LENGTH=520 | SoyBase | E_val: 0 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0009814 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction | SoyBase | N/A | ISS |
| GO:0009864 | GO-bp | Annotation by Michelle Graham. GO Biological Process: induced systemic resistance, jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009866 | GO-bp | Annotation by Michelle Graham. GO Biological Process: induced systemic resistance, ethylene mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0004707 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: MAP kinase activity | SoyBase | N/A | ISS |
| GO:0004708 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: MAP kinase kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG0581 | KOG | Mitogen-activated protein kinase kinase (MAP2K) | JGI | ISS | |
| PTHR24360 | Panther | MAPKK/MEKK | JGI | ISS | |
| PTHR24360:SF40 | Panther | JGI | ISS | ||
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| UniRef100_G7KQ07 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Dual specificity mitogen-activated protein kinase kinase n=1 Tax=Medicago truncatula RepID=G7KQ07_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K1I0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K1I0_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma05g08720 not represented in the dataset |
Glyma05g08720 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g00220 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g005900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g08720.1 sequence type=CDS gene model=Glyma05g08720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTGGGTTGGAGGAATTGAGAAAAAAGCTTGCACCTTTATTTGATGCCGAGAAGGGGTTCTCATCAAGTTCAACGTTGGACCCTTGTGATTCTTACACATTCTCGGATGGTGGGACTGTGAACTTGTTGAGTAGATCATATGGGGTGTACAATATCAACGAGCTTGGGTTGCAGAAGTGCACATCTAGGTCCGTGGATGAAACTGATCACAGTGAGAAAACGTATAGGTGTGGTTCCCATGAGATGAGAATCTTTGGAGCAATAGGGAGTGGTGCCAGTAGTGTTGTGCAGAGAGCTATACATATACCAACACATAGGATTCTGGCATTAAAGAAGATCAACATCTTCGAGAAGGAGAAAAGGCAGCAGCTCCTTACTGAGATAAGGACATTATGTGAAGCACCGTGTTATGAGGGTCTTGTAGAATTTCATGGGGCATTTTACACTCCAGACTCTGGACAGATAAGCATAGCTTTGGAGTACATGGATGGAGGATCGCTTGCAGATATCTTACGAATGCATAGAAGGATACCTGAACCTATTCTATCTTCCATGTTTCAGAAGCTCCTGCATGGTCTAAGCTATCTCCATGGAGTTAGACATCTAGTTCACAGAGACATAAAGCCTGCCAATCTACTAGTAAATCTCAAGGGGGAGCCAAAGATTACTGATTTTGGTATTAGTGCCGGCTTAGAGAATTCAGTGGCAATGTGTGCTACATTTGTTGGAACTGTTACATATATGTCACCTGAGAGGATTCGAAATGAAAGCTATTCTTATCCAGCTGATATTTGGAGCCTTGGTCTTGCACTTTTTGAGTGTGGGACAGGAGAATTCCCGTATACTGCAAATGAAGGTCCTGTCAATCTTATGTTGCAGATCCTGGATGATCCATCACCATCACCATTGAAAAACAAGTTTTCACCTGAATTCTGCTCTTTTGTTGATGCTTGCTTACAAAAGGATCCAGATACTAGGCCAACAGCAGAGCAGCTGCTTTCGCACCCCTTTATCACAAAGCATGATGATGCCAAGGTTGATTTGGCAGGATTTGTTCGAAGCGTTTTTGATCCTACACAAAGATTGAAGGATTTAGCAGATATGTTGACAATACATTATTACTTGCTATTTGATGGACCTGATGATTTGTGGCAACATACAAAGAATTTATATAGCGAAAGCTCAATTTTCAGTTTCTCTGGGAAACAACATTGTGGTCCAAGTAATATCTTTACATCTCTATCAAGTATTAGAACTACATTAGTTGGTGACTGGCCTCCTGAAAAGTTGGTGCATGTTGTTGAGAGGCTCCAATGCCGCGCTCACGGTGAAGATGGAGTTGCAATTAGGGTATCGGGATCCTTCATAATTGGAAATCAGTTCCTCATATGTGGAGATGGCATTCAAGTAGAGGGCTTGCCAAACTTCAAGGATCTTGGAATTGACATTCCTAGCAAAAGAATGGGTATATTTCATGAACAATTCATTGTGGAACCAAAAAGCCTTATTGGATGCTACACCATTGTCAAACAAGAGCTATACATTAACCAATAA
>Glyma05g08720.1 sequence type=predicted peptide gene model=Glyma05g08720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSGLEELRKKLAPLFDAEKGFSSSSTLDPCDSYTFSDGGTVNLLSRSYGVYNINELGLQKCTSRSVDETDHSEKTYRCGSHEMRIFGAIGSGASSVVQRAIHIPTHRILALKKINIFEKEKRQQLLTEIRTLCEAPCYEGLVEFHGAFYTPDSGQISIALEYMDGGSLADILRMHRRIPEPILSSMFQKLLHGLSYLHGVRHLVHRDIKPANLLVNLKGEPKITDFGISAGLENSVAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYTANEGPVNLMLQILDDPSPSPLKNKFSPEFCSFVDACLQKDPDTRPTAEQLLSHPFITKHDDAKVDLAGFVRSVFDPTQRLKDLADMLTIHYYLLFDGPDDLWQHTKNLYSESSIFSFSGKQHCGPSNIFTSLSSIRTTLVGDWPPEKLVHVVERLQCRAHGEDGVAIRVSGSFIIGNQFLICGDGIQVEGLPNFKDLGIDIPSKRMGIFHEQFIVEPKSLIGCYTIVKQELYINQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
