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Report for Sequence Feature Glyma05g08720

Feature Type:gene_model
Chromosome:Gm05
Start:8602997
stop:8607698
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G40440AT Annotation by Michelle Graham. TAIR10: mitogen-activated protein kinase kinase 3 | chr5:16182149-16184513 FORWARD LENGTH=520 SoyBaseE_val: 0ISS
GO:0000165GO-bp Annotation by Michelle Graham. GO Biological Process: MAPK cascade SoyBaseN/AISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0009814GO-bp Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction SoyBaseN/AISS
GO:0009864GO-bp Annotation by Michelle Graham. GO Biological Process: induced systemic resistance, jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0009866GO-bp Annotation by Michelle Graham. GO Biological Process: induced systemic resistance, ethylene mediated signaling pathway SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004707GO-mf Annotation by Michelle Graham. GO Molecular Function: MAP kinase activity SoyBaseN/AISS
GO:0004708GO-mf Annotation by Michelle Graham. GO Molecular Function: MAP kinase kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG0581 KOG Mitogen-activated protein kinase kinase (MAP2K) JGI ISS
PTHR24360Panther MAPKK/MEKK JGI ISS
PTHR24360:SF40Panther JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
UniRef100_G7KQ07UniRef Annotation by Michelle Graham. Most informative UniRef hit: Dual specificity mitogen-activated protein kinase kinase n=1 Tax=Medicago truncatula RepID=G7KQ07_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1K1I0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K1I0_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g08720 not represented in the dataset

Glyma05g08720 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma19g00220 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g005900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma05g08720.1   sequence type=CDS   gene model=Glyma05g08720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGGGTTGGAGGAATTGAGAAAAAAGCTTGCACCTTTATTTGATGCCGAGAAGGGGTTCTCATCAAGTTCAACGTTGGACCCTTGTGATTCTTACACATTCTCGGATGGTGGGACTGTGAACTTGTTGAGTAGATCATATGGGGTGTACAATATCAACGAGCTTGGGTTGCAGAAGTGCACATCTAGGTCCGTGGATGAAACTGATCACAGTGAGAAAACGTATAGGTGTGGTTCCCATGAGATGAGAATCTTTGGAGCAATAGGGAGTGGTGCCAGTAGTGTTGTGCAGAGAGCTATACATATACCAACACATAGGATTCTGGCATTAAAGAAGATCAACATCTTCGAGAAGGAGAAAAGGCAGCAGCTCCTTACTGAGATAAGGACATTATGTGAAGCACCGTGTTATGAGGGTCTTGTAGAATTTCATGGGGCATTTTACACTCCAGACTCTGGACAGATAAGCATAGCTTTGGAGTACATGGATGGAGGATCGCTTGCAGATATCTTACGAATGCATAGAAGGATACCTGAACCTATTCTATCTTCCATGTTTCAGAAGCTCCTGCATGGTCTAAGCTATCTCCATGGAGTTAGACATCTAGTTCACAGAGACATAAAGCCTGCCAATCTACTAGTAAATCTCAAGGGGGAGCCAAAGATTACTGATTTTGGTATTAGTGCCGGCTTAGAGAATTCAGTGGCAATGTGTGCTACATTTGTTGGAACTGTTACATATATGTCACCTGAGAGGATTCGAAATGAAAGCTATTCTTATCCAGCTGATATTTGGAGCCTTGGTCTTGCACTTTTTGAGTGTGGGACAGGAGAATTCCCGTATACTGCAAATGAAGGTCCTGTCAATCTTATGTTGCAGATCCTGGATGATCCATCACCATCACCATTGAAAAACAAGTTTTCACCTGAATTCTGCTCTTTTGTTGATGCTTGCTTACAAAAGGATCCAGATACTAGGCCAACAGCAGAGCAGCTGCTTTCGCACCCCTTTATCACAAAGCATGATGATGCCAAGGTTGATTTGGCAGGATTTGTTCGAAGCGTTTTTGATCCTACACAAAGATTGAAGGATTTAGCAGATATGTTGACAATACATTATTACTTGCTATTTGATGGACCTGATGATTTGTGGCAACATACAAAGAATTTATATAGCGAAAGCTCAATTTTCAGTTTCTCTGGGAAACAACATTGTGGTCCAAGTAATATCTTTACATCTCTATCAAGTATTAGAACTACATTAGTTGGTGACTGGCCTCCTGAAAAGTTGGTGCATGTTGTTGAGAGGCTCCAATGCCGCGCTCACGGTGAAGATGGAGTTGCAATTAGGGTATCGGGATCCTTCATAATTGGAAATCAGTTCCTCATATGTGGAGATGGCATTCAAGTAGAGGGCTTGCCAAACTTCAAGGATCTTGGAATTGACATTCCTAGCAAAAGAATGGGTATATTTCATGAACAATTCATTGTGGAACCAAAAAGCCTTATTGGATGCTACACCATTGTCAAACAAGAGCTATACATTAACCAATAA

>Glyma05g08720.1   sequence type=predicted peptide   gene model=Glyma05g08720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGLEELRKKLAPLFDAEKGFSSSSTLDPCDSYTFSDGGTVNLLSRSYGVYNINELGLQKCTSRSVDETDHSEKTYRCGSHEMRIFGAIGSGASSVVQRAIHIPTHRILALKKINIFEKEKRQQLLTEIRTLCEAPCYEGLVEFHGAFYTPDSGQISIALEYMDGGSLADILRMHRRIPEPILSSMFQKLLHGLSYLHGVRHLVHRDIKPANLLVNLKGEPKITDFGISAGLENSVAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYTANEGPVNLMLQILDDPSPSPLKNKFSPEFCSFVDACLQKDPDTRPTAEQLLSHPFITKHDDAKVDLAGFVRSVFDPTQRLKDLADMLTIHYYLLFDGPDDLWQHTKNLYSESSIFSFSGKQHCGPSNIFTSLSSIRTTLVGDWPPEKLVHVVERLQCRAHGEDGVAIRVSGSFIIGNQFLICGDGIQVEGLPNFKDLGIDIPSKRMGIFHEQFIVEPKSLIGCYTIVKQELYINQ*







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