Glyma05g08660 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma05g08660

Feature Type:	gene_model
Chromosome:	Gm05
Start:	8541855
stop:	8542911
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g08660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G01516	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14690.1); Has 67 Blast hits to 67 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr3:207426-207989 FORWARD LENGTH=187	SoyBase	E_val: 1.00E-22	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1K1H1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1K1H1_SOYBN	SoyBase	E_val: 4.00E-105	ISS

Expression Patterns of Glyma05g08660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g08660

Paralog	Evidence	Comments
Glyma19g00970	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g08660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g006400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g08660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g08660

Limit To All Plant Sequences

>Glyma05g08660.2   sequence type=CDS   gene model=Glyma05g08660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAAAAAGAGACAGAGAAAAGAAAGATATGCCTATGGAGATGGTTCAGGGGACAGTACATTGAGAATAATGAAGAAGAAGAAGAATCAGAGTGAGGAGAAGAATCCACGTGGCAGGTTCGAGAAGGAGGAGGAGGGTGGCGGGGAAAAGATAAAGTGTTCGACCAAGCATTGTGGTTCATGCTGCGGCGGCTACGTGGCTGATTGTGTGGCAGTGTGTTGCTGCCCTTGCGCAGTGCTGCATTGTTGTGCTATGGCTATTGTCAAGGGGCCTTCTCTTGTGGGGAGAAAGTGTTTAGGGTTGGGAAAGAAGAACAAGAACAAGAACACCAAGAAAAAGGGGTGTGAAGATGATGTTGTTGTTGTTGTTGTTGAGAGGAACAAGAACAACAACATTGAAAGAGTTCAAAGGGCTGTGAGGGAAATGGACAATATCACTGTCAATGCTGGATTTGATGCAGAGAAGGTTTGGAAGGAGCTCTATCAGATCGGTCATATGGATTTTGGGAGGGTTTCTAGTTCCTCACATGATGATTAA

Predicted protein sequences of Glyma05g08660

Limit To All Plant Sequences

>Glyma05g08660.2   sequence type=predicted peptide   gene model=Glyma05g08660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNKKRQRKERYAYGDGSGDSTLRIMKKKKNQSEEKNPRGRFEKEEEGGGEKIKCSTKHCGSCCGGYVADCVAVCCCPCAVLHCCAMAIVKGPSLVGRKCLGLGKKNKNKNTKKKGCEDDVVVVVVERNKNNNIERVQRAVREMDNITVNAGFDAEKVWKELYQIGHMDFGRVSSSSHDD*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain