Glyma05g08650 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma05g08650

Feature Type:	gene_model
Chromosome:	Gm05
Start:	8527386
stop:	8531214
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g08650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G14700	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein \| chr5:4740502-4743327 REVERSE LENGTH=368	SoyBase	E_val: 5.00E-102	ISS
GO:0009809	GO-bp	Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process	SoyBase	N/A	ISS
GO:0044237	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metabolic process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016621	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cinnamoyl-CoA reductase activity	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
KOG1502	KOG	Flavonol reductase/cinnamoyl-CoA reductase	JGI		ISS
PTHR10366	Panther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	JGI		ISS
PTHR10366:SF9	Panther	NAD(P)H STEROID DEHYDROGENASE-RELATED	JGI		ISS
PF01370	PFAM	NAD dependent epimerase/dehydratase family	JGI		ISS
UniRef100_G3FJ91	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cinnamoyl-CoA reductase n=1 Tax=Betula platyphylla RepID=G3FJ91_BETPL	SoyBase	E_val: 2.00E-130	ISS
UniRef100_I1K1H0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K1H0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g08650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g08650

Paralog	Evidence	Comments
Glyma19g00980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g08650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g006600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g08650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g08650

Limit To All Plant Sequences

>Glyma05g08650.1   sequence type=CDS   gene model=Glyma05g08650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGGCGTGGTGAAGTGAGGGCTACAGAAGGAAATTTGAAAGTAATAATGGCAAACCTAACTGATGTTGATGGGTTGGAGAAAGCATTTCAGGGCTGTCGTGGTGTGTTTCACACCTCTGCATTCACAGACCCTGCTGGTCTATCTGGCTACACAAAATCCATGGCCGAGATTGAAGTAAGGGCTGCTGAGAATGTGATGGAAGCATGTGCAAGAACACCTTCCATAACAAGATGCGTGTTCACATCATCACTATCAGCTTGTGTATGGCAAGACAATGCACAATCAGAACTTTCCTCAGTTATTAGTCATGGGTCTTGGAGCACTGAATCATTCTGCACAGAAAAGAAGCTTTGGTATGCTTTAGGCAAGATGAGAGCAGAGAAGGCTGCTTGGAGAATATCTGATGAAAGGGGTTTGAAGCTCACTACTATTTGTCCAGCTCTAATTACAGGTCCTGAATTTTGTAACAGGAATCCAACAGCAACAATTGCTTATCTCAAAGGTGCCCAAGAAATGTACTCTCGTCGTTTGCTAGCAACAGTTGATGTGACCAAATTGGCTGAAGCTCATGCAAGCGTATTCAAGGAAATGAACAACAATGCATCTGGTAGATACATTTGCTTTGACCATGTAATTGATACACATAGTGAGGCAGAGAAGCTGGCAAAGGATATTGGGATGCCTGAGGAAAAGATATGTGGAGATGCATCAAACAATTCTATTATAAATAGATTTGAACTGTCTAATGAGAAGTTATGCAGACTCATGTCAAGGCGACTCAGGTGTTACAGTGAATATTAG

Predicted protein sequences of Glyma05g08650

Limit To All Plant Sequences

>Glyma05g08650.1   sequence type=predicted peptide   gene model=Glyma05g08650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERRGEVRATEGNLKVIMANLTDVDGLEKAFQGCRGVFHTSAFTDPAGLSGYTKSMAEIEVRAAENVMEACARTPSITRCVFTSSLSACVWQDNAQSELSSVISHGSWSTESFCTEKKLWYALGKMRAEKAAWRISDERGLKLTTICPALITGPEFCNRNPTATIAYLKGAQEMYSRRLLATVDVTKLAEAHASVFKEMNNNASGRYICFDHVIDTHSEAEKLAKDIGMPEEKICGDASNNSIINRFELSNEKLCRLMSRRLRCYSEY*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain