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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G14760 | AT | Annotation by Michelle Graham. TAIR10: L-aspartate oxidase | chr5:4769133-4772012 FORWARD LENGTH=651 | SoyBase | E_val: 0 | ISS |
| GO:0009435 | GO-bp | Annotation by Michelle Graham. GO Biological Process: NAD biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0008734 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: L-aspartate oxidase activity | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG2403 | KOG | Succinate dehydrogenase, flavoprotein subunit | JGI | ISS | |
| PTHR11632 | Panther | SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT | JGI | ISS | |
| PTHR11632:SF6 | Panther | gb def: possible fumarate reductase flavoprotein subunit [leishmania major] | JGI | ISS | |
| PF00890 | PFAM | FAD binding domain | JGI | ISS | |
| PF02910 | PFAM | domain | JGI | ISS | |
| UniRef100_D2DWB4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: L-aspartate oxidase n=1 Tax=Phaseolus vulgaris RepID=D2DWB4_PHAVU | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K1F9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K1F9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g08550 not represented in the dataset |
Glyma05g08550 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g007600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g08550.1 sequence type=CDS gene model=Glyma05g08550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAACTTGTGTTCCTGCTGTAAGTGGTGCACTGCATTATGGAGTGACAAACTGCAAGGGACACAGCTACAGAAGGAGTGCTTCCTTTTCTGATGTGCCTAACACGGGATTCTTACAAAAAGATCTTTCATGGTCTAAAGTGGTATCCAAGGTCCTGCAGATACACAGATGTGGGTTTTCTGCACCTCCACTTCATAAGGATCAGAAACTCTTCAAAGTCATTTCCTCATGGAAGAAAGATAGTCCCACAAAATACTTTGACTTTATCGTCATTGGGAGTGGAATTGCTGGCCTCCGATATGCGCTTGAAGTTGCAAAATATGGATCTGTTGCAGTGATAACCAAGGCTGAGTCTCATGAATGCAATACTAATTATGCTCAAGGTGGTGTTAGTGCTGTGCTATGCCCTTCAGATTCTGTGGAGAGTCACATTAAGGACACCATTGTGGCTGGGGCATATCTTTGTGATGAGGAAAGCGTCCGGGTTGTCTGCACTGAAGGACCCGAAAGAGTCAGAGAACTGATTGCTATGGGTGCATCATTTGATCATGGGGAAGATGGTAACTTGCATCTAATGAGAGAGGGGGGTCATTCACATCATAGAATTGTTCATGCTGCTGATATGACTGGAAAAGAGATTGAACGGGCTCTACTGAAGGAAGTTATCAGTAATCCCAGAATTTTTGTGTTTGAACACCATTTTGCTATAGATCTTCTCACTTGTCAGGATCGATCTGATATGATTTGTCTTGGTGTTGACACACTGAATTCTAAAACCCTAGAGGTGATTAGATTTCTTTCAAAGGTCACTTTACTTGCGTCAGGTGGAGCTGGACATATTTATCCTAAAACTACAAATCCTCTGGTAGCCACTGGAGATGGAATTGCCATGGCACACCGAGCTCAAGCTGTGATTTCCAACATGGAGTTTGTGCAGTTCCATCCAACTGCCTTAGCTGATGAAGGGCTTCCTATTAAACCAACCAAGCCTCGGGAAAATGCATTTCTGATAACTGAAGCTGTCAGAGGTGATGGGGGCATCCTTTATAATTTTGGCATGGAAAGATTCATGCCCTTGTATGATGAGAGGGCAGAGCTTGCTCCAAGGGATGTGGTGGCAAGAAGTATAGACGACCAACTTAAAAAGCGTCATGAGAAGTATGTGCTCCTCGATATAAGTCACAAGCCCAAGGAGGAAATTCTCTCCCATTTCCCCAACATTGCTTCTACGTGTCTCCAGTATGGTTTGGACATAACTCGTCGTCCAATCCCAGTTGTTCCAGCTGCTCATTACATGTGTGGAGGAGTTCAAGCTGGTCTCCAAGGAGAGACCAATGTGAAAGGTCTGTATGTAGCTGGTGAGGTAGCATGCACAGGTTTGCATGGAGCAAATAGACTTGCTAGCAACTCATTGCTTGAGGCACTGGTTTTTGCAAGAAGAGCTGTGCAGCCCTCAGTTGATCACATGAAGGGCTCTAGCCTTGATCTGACTGCATCAAACTTGTGGCCTAGACCCGTTGTGCCTTTGCCACTCGGAAGTAATGTCACAGACAAAATTATGTCAACGACAAAGGAATTGAGGGCAGAACTGCAATCCATCATGTGGGACTATGTAGGAATTGTTCGGTCCACAATGAGACTAGAGACTGCTGAGCAAAAAATTGGTAGTTTAGAAGCTAAATGGGAGGAGTCTCTGTTTCAGCATGGATGGAAGCCAACAATGGTCGGGCCTGAGATCTGTGAGATGAGAAACCTCTTTTGTTGTGCAAAGCTGGTGGTCAGCAGTGCGCTTTCTAGGCATGAGAGCCGTGGACTACATTACACTGTTGATTTTCCTTATCTCGAGGAGAGTAAGAGACTTCCAACAATCATTTTTCCAAGTTCACCTGTAAACAGTACATGGAGTTCTCGGCAATTACACAAGCAGCCCATGTACCAGTAA
>Glyma05g08550.1 sequence type=predicted peptide gene model=Glyma05g08550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATCVPAVSGALHYGVTNCKGHSYRRSASFSDVPNTGFLQKDLSWSKVVSKVLQIHRCGFSAPPLHKDQKLFKVISSWKKDSPTKYFDFIVIGSGIAGLRYALEVAKYGSVAVITKAESHECNTNYAQGGVSAVLCPSDSVESHIKDTIVAGAYLCDEESVRVVCTEGPERVRELIAMGASFDHGEDGNLHLMREGGHSHHRIVHAADMTGKEIERALLKEVISNPRIFVFEHHFAIDLLTCQDRSDMICLGVDTLNSKTLEVIRFLSKVTLLASGGAGHIYPKTTNPLVATGDGIAMAHRAQAVISNMEFVQFHPTALADEGLPIKPTKPRENAFLITEAVRGDGGILYNFGMERFMPLYDERAELAPRDVVARSIDDQLKKRHEKYVLLDISHKPKEEILSHFPNIASTCLQYGLDITRRPIPVVPAAHYMCGGVQAGLQGETNVKGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSVDHMKGSSLDLTASNLWPRPVVPLPLGSNVTDKIMSTTKELRAELQSIMWDYVGIVRSTMRLETAEQKIGSLEAKWEESLFQHGWKPTMVGPEICEMRNLFCCAKLVVSSALSRHESRGLHYTVDFPYLEESKRLPTIIFPSSPVNSTWSSRQLHKQPMYQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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