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Report for Sequence Feature Glyma05g08540

Feature Type:gene_model
Chromosome:Gm05
Start:8392333
stop:8395371
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g08540
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G14450AT Annotation by Michelle Graham. TAIR10: GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:4658488-4660034 FORWARD LENGTH=389 SoyBaseE_val: 1.00E-130ISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0016788GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds SoyBaseN/AISS
PTHR22835Panther ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN JGI ISS
PTHR22835:SF39Panther LATERAL SIGNALING TARGET PROTEIN 2 JGI ISS
PF00657PFAM GDSL-like Lipase/Acylhydrolase JGI ISS
UniRef100_D2DWB3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Carboxilic ester hydrolase n=1 Tax=Phaseolus vulgaris RepID=D2DWB3_PHAVU SoyBaseE_val: 0ISS
UniRef100_I1K1F8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K1F8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g08540
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g08540
ParalogEvidenceComments
Glyma19g01090 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g08540 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g007700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g08540
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g08540
>Glyma05g08540.1   sequence type=CDS   gene model=Glyma05g08540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTGTAGGAGGCTGCTTTATGTAGTTGTGTGGTTCAATCTCTGTGTAGCATGCACATTCATTCAAGTTTCAGCTGGGAATGCCTCTAACTTCAGCAAATGTTGGTTCCCAGCAATTTACAACTTTGGTGACTCAAATTCAGACACAGGAGCTGTTTTTGCAGCATTCACAGGGGTGAAGCCTCCTAATGGCATAAGCTTCTTTGGAAGCCTCTCAGGAAGGGCTTCTGATGGCCGTCTCATCATAGATTTTATGACTGAAGAGTTGAAGCTGCCATACCTGAATGCATATTTGGACTCAGTTGGATCCAATTACAGGCATGGTGCAAACTTTGCAGTAGGAGGCTCCTCCATTCGGCCTGGTGGTTTTAGTCCATTCCCTCTTGGCCTTCAAGTAGCTCAGTTCCTACTGTTCAAGTCTCGCACCAACACTCTTTTTAATCAGCTTTCTAACAACAGGACAGAACCACCTTTCAAGAATAGTGTTCCAAGGCCTGAGGACTTTTCCAGAGCCCTATACACCTTTGATATTGGACAAAATGATCTTGCCTTTGGTCTTCAACACACTTCACAGGAACAAGTTATAAAGTCAATTCCTGAAATCTTAAACCAGTTCTTCCAAGCAGTGCAGCAACTATACAATGTAGGGGCAAGAGTGTTCTGGATTCATAACACCGGTCCAATTGGTTGCTTGCCCTATAGTTACATTTATTATGAGCCCAAGAAGGGTAACGTAGATGCAAATGGCTGTGTAAAACCTCAGAATGATCTTGCTCAGGAATTTAACAGGCAGCTCAAGGACCAAGTGTTTCAGATAAGGAGAAAGTTCCCACTTGCAAAATTTACATATGTTGATGTGTATACTGCCAAGTATGAACTAATCAGCAATGCAAGAAACCAAGGTTTTGTGAGTCCATTGGAGTTCTGTTGTGGCAGTTACTATGGTTACCACATAAATTGTGGGAAGACAGCCATAGTAAATGGAACAGTATATGGAAATCCATGCAAAAATCCTTCCCAACATGTTAGTTGGGATGGCATACACTACTCTCAAGCAGCAAATCAATGGGTTGCTAAAAGAATTCTCTATGGATCCCTCTCTGATCCACCTGTTCAAATAGGGCAGGCATGTTTCTGA
Predicted protein sequences of Glyma05g08540
>Glyma05g08540.1   sequence type=predicted peptide   gene model=Glyma05g08540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNCRRLLYVVVWFNLCVACTFIQVSAGNASNFSKCWFPAIYNFGDSNSDTGAVFAAFTGVKPPNGISFFGSLSGRASDGRLIIDFMTEELKLPYLNAYLDSVGSNYRHGANFAVGGSSIRPGGFSPFPLGLQVAQFLLFKSRTNTLFNQLSNNRTEPPFKNSVPRPEDFSRALYTFDIGQNDLAFGLQHTSQEQVIKSIPEILNQFFQAVQQLYNVGARVFWIHNTGPIGCLPYSYIYYEPKKGNVDANGCVKPQNDLAQEFNRQLKDQVFQIRRKFPLAKFTYVDVYTAKYELISNARNQGFVSPLEFCCGSYYGYHINCGKTAIVNGTVYGNPCKNPSQHVSWDGIHYSQAANQWVAKRILYGSLSDPPVQIGQACF*






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