Glyma05g08530 - SoyBase

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Report for Sequence Feature Glyma05g08530

Feature Type:	gene_model
Chromosome:	Gm05
Start:	8385037
stop:	8388631
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g08530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G27960	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr3:10380513-10382593 REVERSE LENGTH=663	SoyBase	E_val: 0	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0031347	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of defense response	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
KOG1840	KOG	Kinesin light chain	JGI		ISS
PTHR19959	Panther	KINESIN LIGHT CHAIN	JGI		ISS
UniRef100_D2DWB2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Kinesin light chain-like protein n=1 Tax=Phaseolus vulgaris RepID=D2DWB2_PHAVU	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339DEE	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339DEE related cluster n=1 Tax=unknown RepID=UPI0002339DEE	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g08530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g08530

Paralog	Evidence	Comments
Glyma19g01100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g08530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g007800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g08530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g08530

Limit To All Plant Sequences

>Glyma05g08530.2   sequence type=transcript   gene model=Glyma05g08530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACACACACACACACACACACACACACACATATATATATATATATATATATATATATATATATATGTGCAATTACAAATGGTACAGATATGTTGACCCATATCTCTTCATCTGTACATAATAACATAACACCCATACAAGAAAGCAAGCAACCTTTGAAAGTTTTGGCTTATATCCTTCGGAGAGTACTAAAGCCATGGATGAATTGAATGTAAATAGTGCAGCAGAGGAACCAAGTGGGAGTTATAAGGAAAACTTTGCTCAACAAGCATCACCAAGGAGTACACTGAGTCCAAGAAGCATTCAGAGTGATTCAATTGATTTGGCTATTGATGGAGTGGTGGATACCTCAATTGAGCAATTGTATCACAATGTGTGTGAAATGAGGAGCTCTGATCACTCACCCTCCAGGGCTAGTTTCTACTCTTACGACTATGATGGTGAGTCAAGGATTGATTCAGAACTGGGCCATCTTGCTGGTGATATTGTGGATTTGGAGATCACAAAGGAGGTGGTCACAGAGAATAAAGAGGACTCCAATGCCAATGCTGAGAAAGATGCTGTTGTGTCAAAGAAGGATGACAATAACCAATCTTCACCAAACACAAAAGTCATTGAAGGATCATCCAAGGCAACTCCGAAGAGGAGCGAAAAGGGTGTCCGAAAAGCAAATGGCACTTACCGTACGAGGAGGAATAGGAGGGAGCTTGGTTTGAAGGGGATCGAGGAGCGTATTGCTGCAGGTTTAGATAATCCTGAATTGGGACCATTTTTGCTCAAGCAAACAAGAGATATGATCTCCTCGGGTGAGAATCCTCGAAAAGCGCTTGATTTGGCTGTTAGAGCTTTGAAATCATTTGAGATTTGTGCAGATGGGAAACCGAGTTTGGACATGGTCATGTGTCTGCATGTCTTGGCAACAATATACTGTAATTTAGGACAGTACAATGAGGCCATTCCCGTTCTTGAGCGTTCCATTGATATTCCGGTGTTGGAGGATGGCCAAGAGCATGCACTGGCTAAGTTTGCAGGGTGCATGCAATTGGGTGACACTTATGCAATGATGGGGCAGATTGAGAATTCTCTGCTGTTTTATGCAGCAGGTCTTGAGATTCAAGGGCAGGTCCTGGGGGAAACAGACCCGAGATTCGGCGAGACATGCCGGTATGTGGCCGAGGCACATGTTCAGGCACTGCAGTTTGATGAGGCTGAGAAGCTGTGTCAGATGGCTCTTGACATTCACAGGGGAAATGGAGCTCCTGCTTCCATTGAGGAAGCAGCAGATAGGAGACTAATGGGGCTTATCTGTGACTCAAAGGGTGATTATGAAGCTGCTCTAGAGCATTATGTTTTGGCAAGCATGGCTATTGCTGCAAATGATCATGAAGCAGATGTGGCTTCAGTTGATTGCAGCATAGGTGATGCCTACCTGGCGTTGGCACGCTATGATGAGGCGGTGTTTTCTTATCAGAAAGCACTCACTGTGTTCAAATCAACCAAAGGAGAGAATCATCCAACAGTTGCTTCAGTCTATGTTAGGTTGGCTGATCTGTACAACAAGATAGGGAAGTTCAAAGAATCCAAATCTTACTGTGAAAATGCACTCAGGATTTTCGGCAAGATCAAGCCAGGGATCCCCTCAGAAGAGATTGCTAGTGGCTTGATAGATGTTGCTGCAATCTATCAATCCATGAATGATTTGGAGAAAGGGTTGAAGTTGCTCAAAAAGGCCTTGAAGATATATGGCAATGCTCCTGGCCAACAAAGCACTGTTGCAGGAATTGAGGCCCAAATGGGGGTTATGTATTACTTGCTAGGGAACTATTCTGATTCTTACAACATCTTCAAAAGCGCCATTGCCAAATTTCGTGCAAGCGGAGAGAAGAAAACCGCTTTGTTTGGAATTGCTTTGAACCAAATGGGCCTTGCCTGTGTGCAGTGTTATGCTATAAATGAGGCAGCAGATTTGTTTGAAGAGGCCAAGACTATATTGGAAAAAGAGTATGCTCCATATCATCCAGACACCTTAGGGGTCTATAGCAATCTAGCAGGCACCTATGATGCAATGGGAAGAGTGGATGATGCCATTGAAATTTTGGAATATGTAGTTGGCATGAGAGAAGAGAAGCTTGGAACAGCAAACCCAGATGTGGATGATGAGAGGCGTAGGTTGGAAGAGTTGTTGAAAGAAGCCGGCAGGGCCCGAAACAGGAGATCAAGAAGATCATTGGAAACTCTCCTTGACACCAATTCTCAGCTTATAAAAAACAATGGCATTACGGTCCTATAAACCTGTGGTTGTATATAAAACAAGATAAGGTTAACTGTTTTGATCATTATGATCGTTGCTTGCATATTTGGCCGGGGAAACAATAACAAAGTGGAAGTAGATTCCACTATCCAATTGTTTGTTACTAAAGCATGTTCACAAAAGTTACTTCATATATGTCTCTTTTCTATAGTGAAGAGTAAATTCCGGTTACTCATATTTTTCCTTGTATAATTGAATCTATAAATGGTGGAAATTCAAATTTCTATGTATACAAATGGATGTTGAAACTTAAGTTTCCCTGCTGCTGGTACACCA

Coding sequences of Glyma05g08530

Limit To All Plant Sequences

>Glyma05g08530.1   sequence type=CDS   gene model=Glyma05g08530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTGGTTTAGCCATGGATGAATTGAATGTAAATAGTGCAGCAGAGGAACCAAGTGGGAGTTATAAGGAAAACTTTGCTCAACAAGCATCACCAAGGAGTACACTGAGTCCAAGAAGCATTCAGAGTGATTCAATTGATTTGGCTATTGATGGAGTGGTGGATACCTCAATTGAGCAATTGTATCACAATGTGTGTGAAATGAGGAGCTCTGATCACTCACCCTCCAGGGCTAGTTTCTACTCTTACGACTATGATGGTGAGTCAAGGATTGATTCAGAACTGGGCCATCTTGCTGGTGATATTGTGGATTTGGAGATCACAAAGGAGGTGGTCACAGAGAATAAAGAGGACTCCAATGCCAATGCTGAGAAAGATGCTGTTGTGTCAAAGAAGGATGACAATAACCAATCTTCACCAAACACAAAAGTCATTGAAGGATCATCCAAGGCAACTCCGAAGAGGAGCGAAAAGGGTGTCCGAAAAGCAAATGGCACTTACCGTACGAGGAGGAATAGGAGGGAGCTTGGTTTGAAGGGGATCGAGGAGCGTATTGCTGCAGGTTTAGATAATCCTGAATTGGGACCATTTTTGCTCAAGCAAACAAGAGATATGATCTCCTCGGGTGAGAATCCTCGAAAAGCGCTTGATTTGGCTGTTAGAGCTTTGAAATCATTTGAGATTTGTGCAGATGGGAAACCGAGTTTGGACATGGTCATGTGTCTGCATGTCTTGGCAACAATATACTGTAATTTAGGACAGTACAATGAGGCCATTCCCGTTCTTGAGCGTTCCATTGATATTCCGGTGTTGGAGGATGGCCAAGAGCATGCACTGGCTAAGTTTGCAGGGTGCATGCAATTGGGTGACACTTATGCAATGATGGGGCAGATTGAGAATTCTCTGCTGTTTTATGCAGCAGGTCTTGAGATTCAAGGGCAGGTCCTGGGGGAAACAGACCCGAGATTCGGCGAGACATGCCGGTATGTGGCCGAGGCACATGTTCAGGCACTGCAGTTTGATGAGGCTGAGAAGCTGTGTCAGATGGCTCTTGACATTCACAGGGGAAATGGAGCTCCTGCTTCCATTGAGGAAGCAGCAGATAGGAGACTAATGGGGCTTATCTGTGACTCAAAGGGTGATTATGAAGCTGCTCTAGAGCATTATGTTTTGGCAAGCATGGCTATTGCTGCAAATGATCATGAAGCAGATGTGGCTTCAGTTGATTGCAGCATAGGTGATGCCTACCTGGCGTTGGCACGCTATGATGAGGCGGTGTTTTCTTATCAGAAAGCACTCACTGTGTTCAAATCAACCAAAGGAGAGAATCATCCAACAGTTGCTTCAGTCTATGTTAGGTTGGCTGATCTGTACAACAAGATAGGGAAGTTCAAAGAATCCAAATCTTACTGTGAAAATGCACTCAGGATTTTCGGCAAGATCAAGCCAGGGATCCCCTCAGAAGAGATTGCTAGTGGCTTGATAGATGTTGCTGCAATCTATCAATCCATGAATGATTTGGAGAAAGGGTTGAAGTTGCTCAAAAAGGCCTTGAAGATATATGGCAATGCTCCTGGCCAACAAAGCACTGTTGCAGGAATTGAGGCCCAAATGGGGGTTATGTATTACTTGCTAGGGAACTATTCTGATTCTTACAACATCTTCAAAAGCGCCATTGCCAAATTTCGTGCAAGCGGAGAGAAGAAAACCGCTTTGTTTGGAATTGCTTTGAACCAAATGGGCCTTGCCTGTGTGCAGTGTTATGCTATAAATGAGGCAGCAGATTTGTTTGAAGAGGCCAAGACTATATTGGAAAAAGAGTATGCTCCATATCATCCAGACACCTTAGGGGTCTATAGCAATCTAGCAGGCACCTATGATGCAATGGGAAGAGTGGATGATGCCATTGAAATTTTGGAATATGTAGTTGGCATGAGAGAAGAGAAGCTTGGAACAGCAAACCCAGATGTGGATGATGAGAGGCGTAGGTTGGAAGAGTTGTTGAAAGAAGCCGGCAGGGCCCGAAACAGGAGATCAAGAAGATCATTGGAAACTCTCCTTGACACCAATTCTCAGCTTATAAAAAACAATGGCATTACGGTCCTATAA

>Glyma05g08530.2   sequence type=CDS   gene model=Glyma05g08530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGAATTGAATGTAAATAGTGCAGCAGAGGAACCAAGTGGGAGTTATAAGGAAAACTTTGCTCAACAAGCATCACCAAGGAGTACACTGAGTCCAAGAAGCATTCAGAGTGATTCAATTGATTTGGCTATTGATGGAGTGGTGGATACCTCAATTGAGCAATTGTATCACAATGTGTGTGAAATGAGGAGCTCTGATCACTCACCCTCCAGGGCTAGTTTCTACTCTTACGACTATGATGGTGAGTCAAGGATTGATTCAGAACTGGGCCATCTTGCTGGTGATATTGTGGATTTGGAGATCACAAAGGAGGTGGTCACAGAGAATAAAGAGGACTCCAATGCCAATGCTGAGAAAGATGCTGTTGTGTCAAAGAAGGATGACAATAACCAATCTTCACCAAACACAAAAGTCATTGAAGGATCATCCAAGGCAACTCCGAAGAGGAGCGAAAAGGGTGTCCGAAAAGCAAATGGCACTTACCGTACGAGGAGGAATAGGAGGGAGCTTGGTTTGAAGGGGATCGAGGAGCGTATTGCTGCAGGTTTAGATAATCCTGAATTGGGACCATTTTTGCTCAAGCAAACAAGAGATATGATCTCCTCGGGTGAGAATCCTCGAAAAGCGCTTGATTTGGCTGTTAGAGCTTTGAAATCATTTGAGATTTGTGCAGATGGGAAACCGAGTTTGGACATGGTCATGTGTCTGCATGTCTTGGCAACAATATACTGTAATTTAGGACAGTACAATGAGGCCATTCCCGTTCTTGAGCGTTCCATTGATATTCCGGTGTTGGAGGATGGCCAAGAGCATGCACTGGCTAAGTTTGCAGGGTGCATGCAATTGGGTGACACTTATGCAATGATGGGGCAGATTGAGAATTCTCTGCTGTTTTATGCAGCAGGTCTTGAGATTCAAGGGCAGGTCCTGGGGGAAACAGACCCGAGATTCGGCGAGACATGCCGGTATGTGGCCGAGGCACATGTTCAGGCACTGCAGTTTGATGAGGCTGAGAAGCTGTGTCAGATGGCTCTTGACATTCACAGGGGAAATGGAGCTCCTGCTTCCATTGAGGAAGCAGCAGATAGGAGACTAATGGGGCTTATCTGTGACTCAAAGGGTGATTATGAAGCTGCTCTAGAGCATTATGTTTTGGCAAGCATGGCTATTGCTGCAAATGATCATGAAGCAGATGTGGCTTCAGTTGATTGCAGCATAGGTGATGCCTACCTGGCGTTGGCACGCTATGATGAGGCGGTGTTTTCTTATCAGAAAGCACTCACTGTGTTCAAATCAACCAAAGGAGAGAATCATCCAACAGTTGCTTCAGTCTATGTTAGGTTGGCTGATCTGTACAACAAGATAGGGAAGTTCAAAGAATCCAAATCTTACTGTGAAAATGCACTCAGGATTTTCGGCAAGATCAAGCCAGGGATCCCCTCAGAAGAGATTGCTAGTGGCTTGATAGATGTTGCTGCAATCTATCAATCCATGAATGATTTGGAGAAAGGGTTGAAGTTGCTCAAAAAGGCCTTGAAGATATATGGCAATGCTCCTGGCCAACAAAGCACTGTTGCAGGAATTGAGGCCCAAATGGGGGTTATGTATTACTTGCTAGGGAACTATTCTGATTCTTACAACATCTTCAAAAGCGCCATTGCCAAATTTCGTGCAAGCGGAGAGAAGAAAACCGCTTTGTTTGGAATTGCTTTGAACCAAATGGGCCTTGCCTGTGTGCAGTGTTATGCTATAAATGAGGCAGCAGATTTGTTTGAAGAGGCCAAGACTATATTGGAAAAAGAGTATGCTCCATATCATCCAGACACCTTAGGGGTCTATAGCAATCTAGCAGGCACCTATGATGCAATGGGAAGAGTGGATGATGCCATTGAAATTTTGGAATATGTAGTTGGCATGAGAGAAGAGAAGCTTGGAACAGCAAACCCAGATGTGGATGATGAGAGGCGTAGGTTGGAAGAGTTGTTGAAAGAAGCCGGCAGGGCCCGAAACAGGAGATCAAGAAGATCATTGGAAACTCTCCTTGACACCAATTCTCAGCTTATAAAAAACAATGGCATTACGGTCCTATAA

Predicted protein sequences of Glyma05g08530

Limit To All Plant Sequences

>Glyma05g08530.1   sequence type=predicted peptide   gene model=Glyma05g08530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPGLAMDELNVNSAAEEPSGSYKENFAQQASPRSTLSPRSIQSDSIDLAIDGVVDTSIEQLYHNVCEMRSSDHSPSRASFYSYDYDGESRIDSELGHLAGDIVDLEITKEVVTENKEDSNANAEKDAVVSKKDDNNQSSPNTKVIEGSSKATPKRSEKGVRKANGTYRTRRNRRELGLKGIEERIAAGLDNPELGPFLLKQTRDMISSGENPRKALDLAVRALKSFEICADGKPSLDMVMCLHVLATIYCNLGQYNEAIPVLERSIDIPVLEDGQEHALAKFAGCMQLGDTYAMMGQIENSLLFYAAGLEIQGQVLGETDPRFGETCRYVAEAHVQALQFDEAEKLCQMALDIHRGNGAPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMAIAANDHEADVASVDCSIGDAYLALARYDEAVFSYQKALTVFKSTKGENHPTVASVYVRLADLYNKIGKFKESKSYCENALRIFGKIKPGIPSEEIASGLIDVAAIYQSMNDLEKGLKLLKKALKIYGNAPGQQSTVAGIEAQMGVMYYLLGNYSDSYNIFKSAIAKFRASGEKKTALFGIALNQMGLACVQCYAINEAADLFEEAKTILEKEYAPYHPDTLGVYSNLAGTYDAMGRVDDAIEILEYVVGMREEKLGTANPDVDDERRRLEELLKEAGRARNRRSRRSLETLLDTNSQLIKNNGITVL*

>Glyma05g08530.2   sequence type=predicted peptide   gene model=Glyma05g08530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDELNVNSAAEEPSGSYKENFAQQASPRSTLSPRSIQSDSIDLAIDGVVDTSIEQLYHNVCEMRSSDHSPSRASFYSYDYDGESRIDSELGHLAGDIVDLEITKEVVTENKEDSNANAEKDAVVSKKDDNNQSSPNTKVIEGSSKATPKRSEKGVRKANGTYRTRRNRRELGLKGIEERIAAGLDNPELGPFLLKQTRDMISSGENPRKALDLAVRALKSFEICADGKPSLDMVMCLHVLATIYCNLGQYNEAIPVLERSIDIPVLEDGQEHALAKFAGCMQLGDTYAMMGQIENSLLFYAAGLEIQGQVLGETDPRFGETCRYVAEAHVQALQFDEAEKLCQMALDIHRGNGAPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMAIAANDHEADVASVDCSIGDAYLALARYDEAVFSYQKALTVFKSTKGENHPTVASVYVRLADLYNKIGKFKESKSYCENALRIFGKIKPGIPSEEIASGLIDVAAIYQSMNDLEKGLKLLKKALKIYGNAPGQQSTVAGIEAQMGVMYYLLGNYSDSYNIFKSAIAKFRASGEKKTALFGIALNQMGLACVQCYAINEAADLFEEAKTILEKEYAPYHPDTLGVYSNLAGTYDAMGRVDDAIEILEYVVGMREEKLGTANPDVDDERRRLEELLKEAGRARNRRSRRSLETLLDTNSQLIKNNGITVL*

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