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Report for Sequence Feature Glyma05g08470

Feature Type:gene_model
Chromosome:Gm05
Start:8356479
stop:8358204
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g08470
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G15410AT Annotation by Michelle Graham. TAIR10: aspartate-glutamate racemase family | chr1:5299577-5300681 FORWARD LENGTH=330 SoyBaseE_val: 2.00E-94ISS
GO:0006520GO-bp Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016855GO-mf Annotation by Michelle Graham. GO Molecular Function: racemase and epimerase activity, acting on amino acids and derivatives SoyBaseN/AISS
PF01177PFAM Asp/Glu/Hydantoin racemase JGI ISS
UniRef100_B9SEP2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Racemase and epimerase, acting on amino acids and derivatives, putative n=1 Tax=Ricinus communis RepID=B9SEP2_RICCO SoyBaseE_val: 3.00E-110ISS
UniRef100_I1K1F3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K1F3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g08470
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g08470
ParalogEvidenceComments
Glyma17g12541 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g08470 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g008200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g08470
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g08470
>Glyma05g08470.2   sequence type=CDS   gene model=Glyma05g08470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGTAATTGAGAGGAGAAAAAAAATATCCTTTAGAAACTGGGTTGTTGTTATATTAGAGATGCTAGAAAGGGGCATATTGATGTCTATGCAGACACTGAATCACCCTCCATTTCTGACTGGAGATGCCTTTAGAAAGAGGACTCAGACTCGGTGCAGAGGGAGAGCAAATTCAACCACAGCTTTGCAGTTATCTTCTGATGAGAGTGGAAACTTTGCAGAACCAGGTACTTCCCTTATGAGATGTAAAAACTCTGGTTCCCTTCTAAGCCAACCAAACACTGTTGGTGTTATAGGAGGGGTATCACTTCTATCAACTCTGATTTTCTTGGAGAAACTTGCTTGTTGGGGTTCAAGAAATGGTAAAGAATGTCCACCTTTTGTTGTTTCCAGTGATCCTGAGTTGAGCAAAGTGCTTTCATTACGTGGTCCTCTTCCTTCTGCAAGGAGCAGATTTGATCGTATCAAATTGAATCAGGACCTTGTGATTGAGAATTTGCGGAGCAAAAGGAACTTTCTGCAGCAGTCTGGAGCTCGTGGTTTGGCCATGCCTTGCCATCTCTCACATGCGTGGCACAGTGAAATTTCTGAGGATAGTTCACTACCCTTTCTTCATGATGGTGATTGTGTTGCCATGGAACTCAAGAACGCCATGTTGAAGCCAATTCATGCTGCTGTTACTGTGGGGATTGGACTTCTGACTACAGATTCAAATTTTGTAGCTAGTTATTACCAGGAGAAGCTTCAAAGTCAGGGATTTGAAGTAGTGTTTCTAGACAAAGCAACCGAAGAACATGTATTGGTTCCTGCAATGGAGGCGTTGTACAGAAAGGACGTGGAAGGGGCAAGGAATTTATTGAGAATTGCAATCCATGTTCTTTTGGTTAGGGCAGTGAATGTGGTGCTTCTGGCATCTGATGATTTGCTGGGGGTTCTCCCTCACAATGATCCTCTTCTACGGAAATGCATAGACCCAATGGATGCTTTGGCCAGGTCAACTATACATTGGGCAGAAACAACGGCAGAGGTACACAAGAACATTTAG
Predicted protein sequences of Glyma05g08470
>Glyma05g08470.2   sequence type=predicted peptide   gene model=Glyma05g08470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFVIERRKKISFRNWVVVILEMLERGILMSMQTLNHPPFLTGDAFRKRTQTRCRGRANSTTALQLSSDESGNFAEPGTSLMRCKNSGSLLSQPNTVGVIGGVSLLSTLIFLEKLACWGSRNGKECPPFVVSSDPELSKVLSLRGPLPSARSRFDRIKLNQDLVIENLRSKRNFLQQSGARGLAMPCHLSHAWHSEISEDSSLPFLHDGDCVAMELKNAMLKPIHAAVTVGIGLLTTDSNFVASYYQEKLQSQGFEVVFLDKATEEHVLVPAMEALYRKDVEGARNLLRIAIHVLLVRAVNVVLLASDDLLGVLPHNDPLLRKCIDPMDALARSTIHWAETTAEVHKNI*






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