Report for Sequence Feature Glyma05g08420
Feature Type: gene_model
Chromosome: Gm05
Start: 8325456
stop: 8327669
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g08420
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G08070 AT
Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2514374-2516599 REVERSE LENGTH=741
SoyBase E_val: 0 ISS
GO:0031425 GO-bp
Annotation by Michelle Graham. GO Biological Process: chloroplast RNA processing
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24015:SF153 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_G7JVA7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat protein n=1 Tax=Medicago truncatula RepID=G7JVA7_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233A711 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233A711 related cluster n=1 Tax=unknown RepID=UPI000233A711
SoyBase E_val: 0 ISS
Expression Patterns of Glyma05g08420
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma05g08420
Paralog Evidence Comments
Glyma17g12590 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g08420 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g008800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g08420
Coding sequences of Glyma05g08420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g08420.1 sequence type=CDS gene model=Glyma05g08420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATGGTGTCGTGTCTTTCCCCTCCCTTTGTTCACTTTCTTCCTTCCTCGGACCCTCCATACAAGCTTCTTGAAAACCACCCTCATCTGAATCTGCTTGCCAAATGCCCCGACATCCCCAGCCTCAAACAAATCCACTCCCTCATCATCAAAAGCGGTCTCCACAACACCCTCTTCGCCCAGAGCAAGCTCATCGAGTTCTGCGCCCTTTCCCCTTCCCGAGACCTCTCCTACGCCCTCTCTCTCTTCCACTCCATCCACCACCAACCACCCAACATCTTCATCTGGAACACCCTCATTCGCGCCCACTCCCTCACCCCCACTCCCACCTCCTCCTTACACCTCTTCTCCCAAATGTTGCACTCCGGCCTCTACCCCAATTCCCACACCTTCCCTTCCCTCTTCAAGTCCTGTGCCAAATCAAAAGCCACCCATGAAGCCAAACAGCTTCACGCACATGCCCTCAAGCTCGCCCTTCACCTTCATCCACACGTCCACACTTCGCTCATTCACATGTATTCTCAAGTTGGTGAATTACGCCATGCGCGCTTGGTGTTTGATAAAAGTACTCTGAGAGACGCGGTGTCCTTCACTGCTCTTATTACTGGGTATGTGTCCGAGGGCCACGTGGATGACGCTCGACGCCTTTTTGATGAAATTCCCGCCAAGGATGTGGTTTCATGGAATGCCATGATTGCTGGGTATGTTCAAAGTGGTCGCTTTGAGGAAGCCCTGGCGTGCTTTACACGCATGCAGGAGGCTGACGTGTCGCCGAATCAGAGCACTATGGTGAGTGTTCTTTCTGCTTGTGGCCATTTGCGGTCGCTTGAGTTGGGGAAATGGATCGGTTCTTGGGTTAGAGATCGTGGGTTTGGTAAGAATCTTCAGCTTGTTAATGCACTCGTTGATATGTATTCCAAGTGTGGTGAAATTGGTACTGCGCGTAAGTTGTTTGATGGGATGGAGGACAAAGATGTGATTTTGTGGAATACTATGATTGGTGGTTATTGCCACTTGAGTTTGTACGAGGAAGCCTTGGTGTTGTTTGAGGTCATGCTTAGAGAAAACGTGACGCCTAATGATGTAACGTTCTTGGCCGTTCTTCCGGCTTGTGCTTCCCTTGGTGCTCTTGACCTTGGCAAGTGGGTTCATGCTTATATAGATAAAAACTTGAAAGGCACGGGTAATGTGAATAATGTTTCTCTTTGGACTAGTATCATCGTCATGTATGCAAAGTGTGGCTGTGTTGAGGTGGCGGAACAAGTGTTTAGAAGCATGGGTTCTAGAAGTTTGGCTTCTTGGAATGCCATGATATCAGGGTTAGCCATGAATGGACATGCAGAGAGGGCTCTTGGCCTTTTCGAAGAAATGATCAATGAGGGGTTCCAGCCCGATGATATCACGTTTGTTGGAGTATTATCTGCTTGTACTCAAGCTGGTTTTGTAGAGCTTGGACACCGATATTTCAGTTCAATGAACAAGGATTACGGGATATCACCAAAATTGCAACACTATGGTTGCATGATAGATCTACTAGCTAGAAGTGGAAAGTTCGATGAAGCTAAGGTTCTGATGGGAAATATGGAAATGGAGCCGGATGGAGCTATTTGGGGTTCTCTGCTTAATGCTTGTAGGATTCATGGACAGGTTGAGTTCGGTGAGTATGTTGCAGAACGCCTCTTTGAATTGGAGCCAGAAAATTCCGGGGCATATGTGCTTTTGTCAAACATATATGCAGGAGCTGGCAGATGGGATGATGTAGCAAAGATAAGAACTAAGTTAAATGACAAAGGAATGAAGAAAGTTCCCGGTTGCACCTCTATAGAGATTGATGGTGTTGTGCATGAGTTCCTTGTTGGTGATAAGTTCCACCCACAGAGTGAAAATATTTTTAGAATGCTGGATGAGGTAGATAGGCTCTTGGAGGAGACTGGGTTTGTGCCTGATACTTCTGAGGTACTCTATGATATGGATGAGGAGTGGAAGGAAGGGGCTTTGACTCAACACAGTGAGAAGTTGGCTATTGCTTTCGGTTTGATAAGCACAAAGCCGGGAAGTACAATTAGGATCGTGAAGAATCTTCGTGTTTGTCGAAATTGCCATTCGGCTACTAAGTTAATATCCAAGATCTTCAATAGGGAAATAATTGCAAGGGATAGAAACCGTTTTCACCATTTCAAAGATGGGTTTTGCTCATGCAATGACCGCTGGTGA
Predicted protein sequences of Glyma05g08420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g08420.1 sequence type=predicted peptide gene model=Glyma05g08420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MMVSCLSPPFVHFLPSSDPPYKLLENHPHLNLLAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFVPDTSEVLYDMDEEWKEGALTQHSEKLAIAFGLISTKPGSTIRIVKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGFCSCNDRW*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
