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Report for Sequence Feature Glyma05g08380

Feature Type:gene_model
Chromosome:Gm05
Start:8311162
stop:8312082
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g08380
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G25940AT Annotation by Michelle Graham. TAIR10: early nodulin-related | chr5:9054252-9055151 REVERSE LENGTH=115 SoyBaseE_val: 8.00E-18ISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF03386PFAM Early nodulin 93 ENOD93 protein JGI ISS
UniRef100_G7JVA6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Early nodulin 93 protein n=1 Tax=Medicago truncatula RepID=G7JVA6_MEDTR SoyBaseE_val: 1.00E-46ISS
UniRef100_UPI0002339C9BUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339C9B related cluster n=1 Tax=unknown RepID=UPI0002339C9B SoyBaseE_val: 7.00E-69ISS

Expression Patterns of Glyma05g08380
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g08380 not represented in the dataset
Glyma05g08380 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g08380 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g009100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g08380
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g08380
>Glyma05g08380.2   sequence type=CDS   gene model=Glyma05g08380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCAAGAGAAACGTTGCTGCTAATTCTTCTTTTGAGACTACTAGCTTGGCTTCTCTGCACCAAAAGTTGGCCATGGCCAAGCGATGCTCTCAGGGTGTGATGGCAGGAGCTAAGACAGCAGTTGCTGCTAGTATTGCCACTGCCATTCCAACTCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCCAATCTCAATCACACTGCTCAGGCTCTCATAATTTCCACAGTGACGGGAGCAGCATATTTCATAGAAGCTGACAAGACTGTCTTGGCAACTGCAAGAAAGAACTCCTTCAACCAACCCTCCAATGCATGA
Predicted protein sequences of Glyma05g08380
>Glyma05g08380.2   sequence type=predicted peptide   gene model=Glyma05g08380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTKRNVAANSSFETTSLASLHQKLAMAKRCSQGVMAGAKTAVAASIATAIPTLASVRMLPWARANLNHTAQALIISTVTGAAYFIEADKTVLATARKNSFNQPSNA*






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