Report for Sequence Feature Glyma05g08350
Feature Type: gene_model
Chromosome: Gm05
Start: 8287640
stop: 8289381
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g08350
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
UniRef100_I1K1E3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K1E3_SOYBN
SoyBase E_val: 1.00E-69 ISS
Expression Patterns of Glyma05g08350
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma05g08350
Paralog Evidence Comments
Glyma17g12640 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g08350 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g009400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g08350
Transcripts of Glyma05g08350
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g08350.2 sequence type=transcript gene model=Glyma05g08350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AGGCAAAAGACCAAAACAGAAACTAGAACATAGCAGCTGAAACCCACGGGAAACAAACCCATTCATAAATGATAGACAAATGAGTTGTTTGAGAAATTGAGTGTGAGAAGAGGAATAAGAATAGATATTGCAATTTGGAAGGGATGAATCTAAGGCCATTGGGGCCATTGGTTAGGATGGCTGTAGTTATATTTGGTGGAGTGGCCACTTTGAACTTGGCTTCTGCTGCTACCATCAAAGTGCTTCGGTTTGCGTCTGAGAAGAAACGGGAAAAAGTTGCGTTGCCGTGTAGGGTTTGTAGAGGGAAGGGGTTTTATATATGCAAACTGTGCAATGGGAACTCCACCATATCTTGGTCACCAATGTTCGACCCTATTGCAATTAACCCCTGCGTTTGTCCAACTTGCGAAGGAAACAGAGTTCAACGCTGTTTGAACTGTCTTGGAAAAGGCTATGATTGACCTATTATGACTGAGATATTGAGATGGATACTGTTGCATTTCGTTTGTTCATTTAAGATGTATGATTATGCAAGTGACTTGTTGAAGTGTATTTTGCTGCATCTGAGAGCTTGCACATCTTTGTCATTTTTTTTTTCAGATTCAGTTGCCTTCCCAGTAATAGAATGAGAGCTAAGCAATAGTTCTGTAATAAATCTTGGTTTGCCAAATCAATGGAGCCAATGCAGTAATGTCGAATCACCTATAGGGAATGAATTAGACGGTGCTCCATTTGGATATGCAGATGGACTTTTAAACTTTCTTTGCTTATTAAAGTGGCGAAGTTTCATCGTTAGCTTAAAATTATAACTTTTAGTAAATATCATCATTTCGTGTTTTGTATTTGTTGTAGCTTGTGGAAGGTAGTTTTAGCCATGTTCATTAGGTACTTAATAAACTTTTCTTCCTGCCGACCCTATTGCTTTTTGCTTACTTTA
Coding sequences of Glyma05g08350
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g08350.1 sequence type=CDS gene model=Glyma05g08350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAATCTAAGGCCATTGGGGCCATTGGTTAGGATGGCTGTAGTTATATTTGGTGGAGTGGCCACTTTGAACTTGGCTTCTGCTGCTACCATCAAAGTGCTTCGGTTTGCGTCTGAGAAGAAACGGGAAAAAGTTGCGTTGCCGTGTAGGGTTTGTAGAGGGAAGGGGTTTTATATATGCAAACTGTGCAATGGGAACTCCACCATATCTTGGTCACCAATGTTCGACCCTATTGCAATTAACCCCTGCGTTTGTCCAACTTGCGAAGGAAACAGAGTTCAACGCTGTTTGAACTGTCTTGGAAAAGGCTATGATTGA
>Glyma05g08350.2 sequence type=CDS gene model=Glyma05g08350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAATCTAAGGCCATTGGGGCCATTGGTTAGGATGGCTGTAGTTATATTTGGTGGAGTGGCCACTTTGAACTTGGCTTCTGCTGCTACCATCAAAGTGCTTCGGTTTGCGTCTGAGAAGAAACGGGAAAAAGTTGCGTTGCCGTGTAGGGTTTGTAGAGGGAAGGGGTTTTATATATGCAAACTGTGCAATGGGAACTCCACCATATCTTGGTCACCAATGTTCGACCCTATTGCAATTAACCCCTGCGTTTGTCCAACTTGCGAAGGAAACAGAGTTCAACGCTGTTTGAACTGTCTTGGAAAAGGCTATGATTGA
Predicted protein sequences of Glyma05g08350
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g08350.1 sequence type=predicted peptide gene model=Glyma05g08350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNLRPLGPLVRMAVVIFGGVATLNLASAATIKVLRFASEKKREKVALPCRVCRGKGFYICKLCNGNSTISWSPMFDPIAINPCVCPTCEGNRVQRCLNCLGKGYD*
>Glyma05g08350.2 sequence type=predicted peptide gene model=Glyma05g08350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNLRPLGPLVRMAVVIFGGVATLNLASAATIKVLRFASEKKREKVALPCRVCRGKGFYICKLCNGNSTISWSPMFDPIAINPCVCPTCEGNRVQRCLNCLGKGYD*