Glyma05g08291 - SoyBase

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Report for Sequence Feature Glyma05g08291

Feature Type:	gene_model
Chromosome:	Gm05
Start:	8248252
stop:	8253213
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g08291

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32440	AT	Annotation by Michelle Graham. TAIR10: Plant Tudor-like RNA-binding protein \| chr4:15657295-15658692 FORWARD LENGTH=377	SoyBase	E_val: 8.00E-52	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
PF05641	PFAM	Agenet domain	JGI		ISS
UniRef100_G7JV93	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RNA binding protein n=1 Tax=Medicago truncatula RepID=G7JV93_MEDTR	SoyBase	E_val: 5.00E-150	ISS
UniRef100_I1K1D8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K1D8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g08291

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g08291 not represented in the dataset	Glyma05g08291 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g08291

Paralog	Evidence	Comments
Glyma17g12693	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g08291 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g010000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g08291

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g08291

Limit To All Plant Sequences

>Glyma05g08291.2   sequence type=transcript   gene model=Glyma05g08291   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTAACAGTTAATTCCCACCTCAACAAGCTATTCTTGGGCAGTTGGCAGCTTGGCAATGAAAATTCCTTAATTAAAAAATAAATTAAAATGGATTTTAATTTATAGGAAACACACAATAAATATGATAATTTTACAAATAAAAACAAAAAGGAAAAATTCTACAACAACCGTAATCACAATAACAAGGAGGAAGAGAGAGTGAAAATCACAGAGACGAAAAGATCGTCTTCTGAATCGAAACAAGGTGTTCAGGTTGAAATTTTAGAGTAATATACTTGCAATCATGAGATTTAAGAAAGGGAATAAGGTGGAAGTGTTAAGCAAAGTTGAGGTGCCGTGTGGCTCCTGGCTATATGCAGAGATCATTTGTGGTAATGGCCACCACTATACTGTGAAATATGATGGATATGAAAGTGATGCTGGTGAGGCAATTGTGGAACAGGTGTCCAGGAAAGACATAAGGCCGTGTCCGCCTGCACTTGAACTCACAGATAATTGGAATTCAGGTGATGTTGTAGAGGTCTTCCAGAATTTCTCATGGAAGATGGCTACAGTTTTGAAGGTTTTTGGGAAAAACCACATTTTGGTCAGGCTACTTGGATCTTCTTTGGAATTTCAAGTGAGCAAATTTGACATTCGGGTGAGACAGTCTTGGCAAGATGACAAGTGGATTATAGTTGGAAAGGGTTCTTCCAGCCATGAAAACAGAAAACGTTCTAGCGCCCAACTTCAGAAGATGTATACAAAGACAAAACTGTCAGGTTCCGCTTACTATCGTCCTGAAAAGAAAAAACTGAGTATTCTGGAATCCAAACTCGTTTCTTTTAAAACATTGAAACGAGGAAGCAATTCACAAGTTGACGCATATGCTAAGCCTCCCCCAAAGTTTAGAGCACGTGAAAATGAAGGCAGATGTCACAGAGCAAGACTTAGAAATCCACCCACACCACTCAAACAGGTACAGGGTGTCAGTTTTCCAAGAGAAGTGATCGCTGAAGAATGCATACCTGCTTCTGTAAACAACAGAAAAACTGGGATTTCTAATATGGTTGACATGGAGAGGAGGAAACAGACAGGAGAAAACTTAGAATCAAATCATGCTTATAGTGTTACATGCTCTGTTGGTAGTTGTAGTATCACTAGCAGGAATTCCTATAAATCGCAATTTCCTGTATATGCAGGTCCTTTTGATGATGTAGACAGTTCATTTAGTGATGCTGAGTCTGTCTGCCAGAGGAGTGATGAGGAAGGGAATTGTTCCCCTCCTACACAAGAGGAATTGGCGGCAGAAATTCATAGGGCTGAGAAGGAGGCATATAGGTGTTGCTTCCAGATTTCTACAGATTCTTTCTTGCTCTAGACAAGGGATGGCTTTTCTAGTGTGGCCCTTGATAAGCCAACACATCCATAGTGAATCAATGCTCAGCAATGATCAATAGCACAAGGTCCAAATGGCTCTTGGAAGAACATGGCCACATTAAAGCCGAAATGACACAAGAGCTGGAGACCTTGGATATCAGTTTTGGATGGCCAAATATCTTTCAGTTGGTCAAAGATATGTGCGTGTTCTGTGAAACTTTTTGGCTTCAGTCTGATGTTTAATCGATGTGGAATCCGGTGCTCATTTGAAGCATGTTCCTCGCATGTCAAAACCCTGGTCTTGAAAAGCTGAATAGCTTGCTTAACTTATGATTTTTTTTCCCTTCCATTGTTAGTACATGTTTAGTTTGACATTTACGACCTTTAAACCCTGGGCTAGTCTGTTTCATTTCACTCATTTTATCAAAATCTCTTAATTATCTGGTGCAATATGTGAAAGTTTGTGTAAATGGCACAGCTTAGCCTGACTAAACTTTTGATAATCAAGGTCTTATAAACTTTTATGCCTCA

Coding sequences of Glyma05g08291

Limit To All Plant Sequences

>Glyma05g08291.1   sequence type=CDS   gene model=Glyma05g08291   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGATTTAAGAAAGGGAATAAGGTGGAAGTGTTAAGCAAAGTTGAGGTGCCGTGTGGCTCCTGGCTATATGCAGAGATCATTTGTGGTAATGGCCACCACTATACTGTGAAATATGATGGATATGAAAGTGATGCTGGTGAGGCAATTGTGGAACAGGTGTCCAGGAAAGACATAAGGCCGTGTCCGCCTGCACTTGAACTCACAGATAATTGGAATTCAGGTGATGTTGTAGAGGTCTTCCAGAATTTCTCATGGAAGATGGCTACAGTTTTGAAGGTTTTTGGGAAAAACCACATTTTGGTCAGGCTACTTGGATCTTCTTTGGAATTTCAAGTGAGCAAATTTGACATTCGGGTGAGACAGTCTTGGCAAGATGACAAGTGGATTATAGTTGGAAAGGGTTCTTCCAGCCATGAAAACAGAAAACGTTCTAGCGCCCAACTTCAGAAGATGTATACAAAGACAAAACTGTCAGGTTCCGCTTACTATCGTCCTGAAAAGAAAAAACTGAGTATTCTGGAATCCAAACTCGTTTCTTTTAAAACATTGAAACGAGGAAGCAATTCACAAGTTGACGCATATGCTAAGCCTCCCCCAAAGTTTAGAGCACGTGAAAATGAAGGCAGATGTCACAGAGCAAGACTTAGAAATCCACCCACACCACTCAAACAGGTACAGGGTGTCAGTTTTCCAAGAGAAGTGATCGCTGAAGAATGCATACCTGCTTCTGTAAACAACAGAAAAACTGGGATTTCTAATATGGTTGACATGGAGAGGAGGAAACAGACAGGAGAAAACTTAGAATCAAATCATGCTTATAGTGTTACATGCTCTGTTGGTAGTTGTAGTATCACTAGCAGGAATTCCTATAAATCGCAATTTCCTGTATATGCAGGTCCTTTTGATGATGTAGACAGTTCATTTAGTGATGCTGAGTCTGTCTGCCAGAGGAGTGATGAGGAAGGGAATTGTTCCCCTCCTACACAAGAGGAATTGGCGGCAGAAATTCATAGGGCTGAGAAGGAGGCATATAGGTGTTGCTTCCAGATTTCTACAGATTCTTTCTTGCTCTAG

>Glyma05g08291.2   sequence type=CDS   gene model=Glyma05g08291   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGATTTAAGAAAGGGAATAAGGTGGAAGTGTTAAGCAAAGTTGAGGTGCCGTGTGGCTCCTGGCTATATGCAGAGATCATTTGTGGTAATGGCCACCACTATACTGTGAAATATGATGGATATGAAAGTGATGCTGGTGAGGCAATTGTGGAACAGGTGTCCAGGAAAGACATAAGGCCGTGTCCGCCTGCACTTGAACTCACAGATAATTGGAATTCAGGTGATGTTGTAGAGGTCTTCCAGAATTTCTCATGGAAGATGGCTACAGTTTTGAAGGTTTTTGGGAAAAACCACATTTTGGTCAGGCTACTTGGATCTTCTTTGGAATTTCAAGTGAGCAAATTTGACATTCGGGTGAGACAGTCTTGGCAAGATGACAAGTGGATTATAGTTGGAAAGGGTTCTTCCAGCCATGAAAACAGAAAACGTTCTAGCGCCCAACTTCAGAAGATGTATACAAAGACAAAACTGTCAGGTTCCGCTTACTATCGTCCTGAAAAGAAAAAACTGAGTATTCTGGAATCCAAACTCGTTTCTTTTAAAACATTGAAACGAGGAAGCAATTCACAAGTTGACGCATATGCTAAGCCTCCCCCAAAGTTTAGAGCACGTGAAAATGAAGGCAGATGTCACAGAGCAAGACTTAGAAATCCACCCACACCACTCAAACAGGTACAGGGTGTCAGTTTTCCAAGAGAAGTGATCGCTGAAGAATGCATACCTGCTTCTGTAAACAACAGAAAAACTGGGATTTCTAATATGGTTGACATGGAGAGGAGGAAACAGACAGGAGAAAACTTAGAATCAAATCATGCTTATAGTGTTACATGCTCTGTTGGTAGTTGTAGTATCACTAGCAGGAATTCCTATAAATCGCAATTTCCTGTATATGCAGGTCCTTTTGATGATGTAGACAGTTCATTTAGTGATGCTGAGTCTGTCTGCCAGAGGAGTGATGAGGAAGGGAATTGTTCCCCTCCTACACAAGAGGAATTGGCGGCAGAAATTCATAGGGCTGAGAAGGAGGCATATAGGTGTTGCTTCCAGATTTCTACAGATTCTTTCTTGCTCTAG

Predicted protein sequences of Glyma05g08291

Limit To All Plant Sequences

>Glyma05g08291.1   sequence type=predicted peptide   gene model=Glyma05g08291   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRFKKGNKVEVLSKVEVPCGSWLYAEIICGNGHHYTVKYDGYESDAGEAIVEQVSRKDIRPCPPALELTDNWNSGDVVEVFQNFSWKMATVLKVFGKNHILVRLLGSSLEFQVSKFDIRVRQSWQDDKWIIVGKGSSSHENRKRSSAQLQKMYTKTKLSGSAYYRPEKKKLSILESKLVSFKTLKRGSNSQVDAYAKPPPKFRARENEGRCHRARLRNPPTPLKQVQGVSFPREVIAEECIPASVNNRKTGISNMVDMERRKQTGENLESNHAYSVTCSVGSCSITSRNSYKSQFPVYAGPFDDVDSSFSDAESVCQRSDEEGNCSPPTQEELAAEIHRAEKEAYRCCFQISTDSFLL*

>Glyma05g08291.2   sequence type=predicted peptide   gene model=Glyma05g08291   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRFKKGNKVEVLSKVEVPCGSWLYAEIICGNGHHYTVKYDGYESDAGEAIVEQVSRKDIRPCPPALELTDNWNSGDVVEVFQNFSWKMATVLKVFGKNHILVRLLGSSLEFQVSKFDIRVRQSWQDDKWIIVGKGSSSHENRKRSSAQLQKMYTKTKLSGSAYYRPEKKKLSILESKLVSFKTLKRGSNSQVDAYAKPPPKFRARENEGRCHRARLRNPPTPLKQVQGVSFPREVIAEECIPASVNNRKTGISNMVDMERRKQTGENLESNHAYSVTCSVGSCSITSRNSYKSQFPVYAGPFDDVDSSFSDAESVCQRSDEEGNCSPPTQEELAAEIHRAEKEAYRCCFQISTDSFLL*

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